Difference between revisions of "ModuleList"

! Module !! Version !! URL !! Dependencies !! Description

| Anaconda2 || 5.0.1 || [https://www.continuum.io/anaconda-overview Anaconda2] ||  || Built to complement the rich, open source Python communi

| Anaconda3 || 5.0.1 || [https://www.continuum.io/anaconda-overview Anaconda3] ||  || Built to complement the rich, open source Python communi

| Autoconf || 2.69-GCCcore-7.2.0 || [http://www.gnu.org/software/autoconf/ Autoconf] || GCCcore/7.2.0, M4/1.4.18-GCCcore-7.2.0 || Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro cal

| Automake || 1.15.1-GCCcore-7.2.0 || [http://www.gnu.org/software/automake/automake.html Automake] || GCCcore/7.2.0, Autoconf/2.69-GCCcore-7.2.0 || Automake: GNU Standards-compliant Makefile generator

| Autotools || 20170619-GCCcore-7.2.0 || [http://autotools.io Autotools] || GCCcore/7.2.0, Autoconf/2.69-GCCcore-7.2.0, Automake/1.15.1-GCCcore-7.2.0, libtool/2.4.6-GCCcore-7.2.0 || This bundle collect the standard GNU build tools: Autoconf, Automake and libt

| BLAST || 2.2.26-Linux_x86_64 || [http://blast.ncbi.nlm.nih.gov/ BLAST] || || Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.

| BLAST+ || 2.6.0-foss-2017beocatb-Python-2.7.13 || [http://blast.ncbi.nlm.nih.gov/ BLAST+] || foss/2017beocatb, zlib/1.2.11-GCCcore-7.2.0, bzip2/1.0.6-GCCcore-7.2.0, PCRE/8.41-GCCcore-7.2.0, Python/2.7.13-foss-2017beocatb, Boost/1.63.0-foss-2017beocatb-Python-2.7.13, GMP/6.1.2-GCCcore-7.2.0, libpng/1.6.32-GCCcore-7.2.0, libjpeg-turbo/1.5.2-GCCcore-7.2.0 || Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.

| Bio-SamTools || 1.43-foss-2017beocatb-Perl-5.26.0 || [http://search.cpan.org/~lds/Bio-SamTools/ Bio-SamTools] || foss/2017beocatb, Perl/5.26.0-foss-2017beocatb, BioPerl/1.7.1-foss-2017beocatb-Perl-5.26.0, SAMtools/0.1.17-foss-2017beocatb || This is a Perl interface to the SAMtools sequence alignment interface.

| BioPerl || 1.7.1-foss-2017beocatb-Perl-5.26.0 || [http://www.bioperl.org/ BioPerl] || foss/2017beocatb, Perl/5.26.0-foss-2017beocatb || Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.

| Bison || 3.0.4-GCCcore-6.4.0 || [http://www.gnu.org/software/bison Bison] || GCCcore/6.4.0 || Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tabl

| Bison || 3.0.4-GCCcore-7.2.0 || [http://www.gnu.org/software/bison Bison] || GCCcore/7.2.0 || Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.

| Bison || 3.0.4 || [http://www.gnu.org/software/bison Bison] ||  || Bison is a general-purpose parser generator that converts an annotated context-free gram

| Boost || 1.63.0-foss-2017beocatb-Python-2.7.13 || [http://www.boost.org/ Boost] || foss/2017beocatb, bzip2/1.0.6-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0, Python/2.7.13-foss-2017beocatb || Boost provides free peer-reviewed portable C++ source libraries.

| Bowtie2 || 2.3.3.1-foss-2017beocatb || [http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie2] || foss/2017beocatb, tbb/2018.0.128 || Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads  to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s  of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.  Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome,  its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.

| CGAL || 4.9-foss-2017beocatb || [http://www.cgal.org/ CGAL] || foss/2017beocatb, zlib/1.2.11-GCCcore-7.2.0, Python/2.7.13-foss-2017beocatb, Boost/1.63.0-foss-2017beocatb-Python-2.7.13, MPFR/3.1.5-GCCcore-7.2.0, GMP/6.1.2-GCCcore-7.2.0, libGLU/9.0.0-foss-2017beocatb, Qt/4.8.7-foss-2017beocatb || The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.

| CMake || 3.9.1-GCCcore-7.2.0 || [http://www.cmake.org CMake] || GCCcore/7.2.0, ncurses/6.0-GCCcore-7.2.0 || CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package softwa

| CUDA || 9.0.176_384.81 || [https://developer.nvidia.com/cuda-toolkit CUDA] ||  || CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.

| DB || 6.2.32-GCCcore-7.2.0 || [http://www.oracle.com/technetwork/products/berkeleydb DB] || GCCcore/7.2.0 || Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projec

| Doxygen || 1.8.13-GCCcore-7.2.0 || [http://www.doxygen.org Doxygen] || GCCcore/7.2.0 || Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent

| EasyBuild || 3.4.0 || [https://easybuilders.github.io/easybuild EasyBuild] ||  || EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.

| Eigen || 3.3.4-GCCcore-7.2.0 || [http://eigen.tuxfamily.org/index.php?title=Main_Page Eigen] || GCCcore/7.2.0 || Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.

| FFTW || 3.3.6-gompi-2017b || [http://www.fftw.org FFTW] || gompi/2017b || FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.

| FFTW || 3.3.6-gompi-2017beocatb || [http://www.fftw.org FFTW] || gompi/2017beocatb || FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.

| FLTK || 1.3.4-foss-2017beocatb || [http://www.fltk.org FLTK] || foss/2017beocatb, Mesa/17.0.2-foss-2017beocatb, libGLU/9.0.0-foss-2017beocatb, libpng/1.6.32-GCCcore-7.2.0, libjpeg-turbo/1.5.2-GCCcore-7.2.0, xprop/1.2.2-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0 || FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.

| GC3Pie || 2.4.2 || [n: GC3Pie is a Python package for running large job campaigns on diverse batch-oriented execution environments. - Homepage: https://gc3pie.readthedocs.org GC3Pie] || || GC3Pie is a Python package for running large job campaigns on diverse batch-oriented execution environments. - Homepage: https://gc3pie.readthedocs.org

| GCC || 6.4.0-2.28 || [http://gcc.gnu.org/ GCC] || GCCcore/6.4.0, binutils/2.28-GCCcore-6.4.0 || The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).  [NOTE: This module does not include Objective-C, Java or A

| GCC || 7.1.0-2.28 || [http://gcc.gnu.org/ GCC] || GCCcore/7.1.0, binutils/2.28-GCCcore-7.1.0 || The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

| GCC || 7.2.0-2.29 || [http://gcc.gnu.org/ GCC] || GCCcore/7.2.0, binutils/2.29-GCCcore-7.2.0 || The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

| GCCcore || 6.4.0 || [http://gcc.gnu.org/ GCCcore] ||  || The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). [NOTE: This module does not include Objective-C, Java or A

| GCCcore || 7.1.0 || [http://gcc.gnu.org/ GCCcore] || || The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

| GCCcore || 7.2.0 || [http://gcc.gnu.org/ GCCcore] ||  || The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).

| GDAL || 2.2.0-foss-2017beocatb-Python-2.7.13 || [http://www.gdal.org/ GDAL] || foss/2017beocatb, Python/2.7.13-foss-2017beocatb, netCDF/4.4.1.1-foss-2017beocatb, expat/2.2.4-GCCcore-7.2.0, GEOS/3.6.1-foss-2017beocatb-Python-2.7.13, SQLite/3.20.1-GCCcore-7.2.0, libxml2/2.9.4-GCCcore-7.2.0, libpng/1.6.32-GCCcore-7.2.0, libjpeg-turbo/1.5.2-GCCcore-7.2.0, JasPer/2.0.12-foss-2017beocatb, LibTIFF/4.0.8-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0, cURL/7.55.1-GCCcore-7.2.0, PCRE/8.41-GCCcore-7.2.0 || GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.

| GEOS || 3.6.1-foss-2017beocatb-Python-2.7.13 || [http://trac.osgeo.org/geos GEOS] || foss/2017beocatb, Python/2.7.13-foss-2017beocatb || GEOS (Geometry Engine - Open Source) is a C++ port of the  Java Topology Suite (JTS)

| GL2PS || 1.4.0-foss-2017beocatb || [http://www.geuz.org/gl2ps/ GL2PS] || foss/2017beocatb, X11/20170314-GCCcore-7.2.0, Mesa/17.0.2-foss-2017beocatb, libGLU/9.0.0-foss-2017beocatb, freeglut/3.0.0-foss-2017beocatb, libpng/1.6.32-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0 || GL2PS: an OpenGL to PostScript printing library

| GLPK || 4.61-foss-2017beocatb || [https://www.gnu.org/software/glpk/ GLPK] || foss/2017beocatb, GMP/6.1.2-GCCcore-7.2.0 || The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C  and organized in the form of a callable library.

| GLib || 2.53.5-GCCcore-7.2.0 || [http://www.gtk.org/ GLib] || GCCcore/7.2.0, libffi/3.2.1-GCCcore-7.2.0, gettext/0.19.8.1-GCCcore-7.2.0, libxml2/2.9.4-GCCcore-7.2.0, PCRE/8.41-GCCcore-7.2.0, util-linux/2.30.1-GCCcore-7.2.0 || GLib is one of the base libraries of the GTK+ project

| GMP || 6.1.2-GCCcore-7.2.0 || [http://gmplib.org/ GMP] || GCCcore/7.2.0 || GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbe

| GObject-Introspection || 1.53.5-foss-2017beocatb || [https://wiki.gnome.org/GObjectIntrospection/ GObject-Introspection] || foss/2017beocatb, GLib/2.53.5-GCCcore-7.2.0, libffi/3.2.1-GCCcore-7.2.0, Python/2.7.13-foss-2017beocatb || GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.

| GROMACS || 2016.4-foss-2017beocatb-hybrid || [http://www.gromacs.org GROMACS] || foss/2017beocatb, Boost/1.63.0-foss-2017beocatb-Python-2.7.13 || GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.

| Ghostscript || 9.21-foss-2017beocatb || [http://ghostscript.com Ghostscript] || foss/2017beocatb, zlib/1.2.11-GCCcore-7.2.0, libpng/1.6.32-GCCcore-7.2.0, freetype/2.8-GCCcore-7.2.0, libjpeg-turbo/1.5.2-GCCcore-7.2.0, expat/2.2.4-GCCcore-7.2.0, GLib/2.53.5-GCCcore-7.2.0, cairo/1.14.8-foss-2017beocatb, LibTIFF/4.0.8-GCCcore-7.2.0 || Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.

| GraphicsMagick || 1.3.25-foss-2017beocatb || [http://www.graphicsmagick.org/ GraphicsMagick] || foss/2017beocatb, X11/20170314-GCCcore-7.2.0, bzip2/1.0.6-GCCcore-7.2.0, freetype/2.8-GCCcore-7.2.0, libpng/1.6.32-GCCcore-7.2.0, libjpeg-turbo/1.5.2-GCCcore-7.2.0, LibTIFF/4.0.8-GCCcore-7.2.0, libxml2/2.9.4-GCCcore-7.2.0, XZ/5.2.3-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0, Ghostscript/9.21-foss-2017beocatb || GraphicsMagick is the swiss army knife of image processing.

| HDF5 || 1.8.19-foss-2017beocatb || [https://support.hdfgroup.org/HDF5/ HDF5] || foss/2017beocatb, zlib/1.2.11-GCCcore-7.2.0, Szip/2.1.1-GCCcore-7.2.0 || HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.

| HTSlib || 1.6-foss-2017beocatb || [http://www.htslib.org/ HTSlib] || foss/2017beocatb, zlib/1.2.11-GCCcore-7.2.0, bzip2/1.0.6-GCCcore-7.2.0, XZ/5.2.3-GCCcore-7.2.0, cURL/7.55.1-GCCcore-7.2.0 || A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix

| HarfBuzz || 1.3.1-foss-2017beocatb || [http://www.freedesktop.org/wiki/Software/HarfBuzz HarfBuzz] || foss/2017beocatb, GLib/2.53.5-GCCcore-7.2.0, cairo/1.14.8-foss-2017beocatb, freetype/2.8-GCCcore-7.2.0 || HarfBuzz is an OpenType text shaping engine.

| JasPer || 2.0.12-foss-2017beocatb || [http://www.ece.uvic.ca/~frodo/jasper/ JasPer] || foss/2017beocatb || The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.

| Java || 1.8.0_131 || [http://java.com/ Java] || || Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.

| Java || 1.8.0_144 || [http://java.com/ Java] ||  || Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and serve

| LLVM || 4.0.1-foss-2017beocatb || [http://llvm.org/ LLVM] || foss/2017beocatb, ncurses/6.0-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0 || The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.

| LibTIFF || 4.0.8-GCCcore-7.2.0 || [http://www.remotesensing.org/libtiff/ LibTIFF] || GCCcore/7.2.0 || tiff: Library and tools for reading and writing TIFF data files

| M4 || 1.4.17 || [http://www.gnu.org/software/m4/m4.html M4] ||  || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions  (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e

| M4 || 1.4.18-GCCcore-6.4.0 || [http://www.gnu.org/software/m4/m4.html M4] || GCCcore/6.4.0 || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e

| M4 || 1.4.18-GCCcore-7.2.0 || [http://www.gnu.org/software/m4/m4.html M4] || GCCcore/7.2.0 || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible  although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.

| M4 || 1.4.18 || [http://www.gnu.org/software/m4/m4.html M4] ||  || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions  (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e

| METIS || 5.1.0-foss-2017beocatb || [http://glaros.dtc.umn.edu/gkhome/metis/metis/overview METIS] || foss/2017beocatb || METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.

| METIS || 5.1.0-iomkl-2017beocatb || [http://glaros.dtc.umn.edu/gkhome/metis/metis/overview METIS] || iomkl/2017beocatb || METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.

| MPFR || 3.1.5-GCCcore-7.2.0 || [http://www.mpfr.org MPFR] || GCCcore/7.2.0, GMP/6.1.2-GCCcore-7.2.0 || The MPFR library is a C library for multiple-precision floating-point computations with correct roundi

| MVAPICH2 || 2.3b-GCC-7.2.0-2.29 || [http://mvapich.cse.ohio-state.edu/overview/mvapich2/ MVAPICH2] || GCC/7.2.0-2.29 || This is an MPI 3.0 implementation.  It is based on MPICH2 and MVICH.

| Mako || 1.0.6-foss-2017beocatb-Python-2.7.13 || [http://www.makotemplates.org Mako] || foss/2017beocatb, Python/2.7.13-foss-2017beocatb || A super-fast templating language that borrows the best ideas from the existing templating languages

| Mesa || 17.0.2-foss-2017beocatb || [http://www.mesa3d.org/ Mesa] || foss/2017beocatb, zlib/1.2.11-GCCcore-7.2.0, nettle/3.3-GCCcore-7.2.0, libdrm/2.4.76-GCCcore-7.2.0, LLVM/4.0.1-foss-2017beocatb, X11/20170314-GCCcore-7.2.0 || Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.

| NASM || 2.13.01-GCCcore-7.2.0 || [http://www.nasm.us/ NASM] || GCCcore/7.2.0 || NASM: General-purpose x86 assembler

| NLopt || 2.4.2-foss-2017beocatb || [http://ab-initio.mit.edu/wiki/index.php/NLopt NLopt] || foss/2017beocatb || NLopt is a free/open-source library for nonlinear optimization,  providing a common interface for a number of different free optimization routines  available online as well as original implementations of various other algorithms.

| Octave || 4.2.1-foss-2017beocatb || [http://www.gnu.org/software/octave/ Octave] || foss/2017beocatb, X11/20170314-GCCcore-7.2.0, PCRE/8.41-GCCcore-7.2.0, ncurses/6.0-GCCcore-7.2.0, libreadline/7.0-GCCcore-7.2.0, arpack-ng/3.5.0-foss-2017beocatb, cURL/7.55.1-GCCcore-7.2.0, FLTK/1.3.4-foss-2017beocatb, fontconfig/2.12.4-GCCcore-7.2.0, freetype/2.8-GCCcore-7.2.0, GLPK/4.61-foss-2017beocatb, GL2PS/1.4.0-foss-2017beocatb, gnuplot/5.0.6-foss-2017beocatb, Java/1.8.0_144, zlib/1.2.11-GCCcore-7.2.0, Mesa/17.0.2-foss-2017beocatb, libGLU/9.0.0-foss-2017beocatb, Qhull/2015.2-foss-2017beocatb, Qt5/5.8.0-foss-2017beocatb, HDF5/1.8.19-foss-2017beocatb, qrupdate/1.1.2-foss-2017beocatb, SuiteSparse/4.5.5-foss-2017beocatb-METIS-5.1.0, GraphicsMagick/1.3.25-foss-2017beocatb, FFTW/3.3.6-gompi-2017beocatb || GNU Octave is a high-level interpreted language, primarily intended for numerical computations.

| OpenBLAS || 0.2.20-GCC-6.4.0-2.28 || [http://xianyi.github.com/OpenBLAS/ OpenBLAS] || GCC/6.4.0-2.28 || OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.

| OpenBLAS || 0.2.20-GCC-7.2.0-2.29 || [http://xianyi.github.com/OpenBLAS/ OpenBLAS] || GCC/7.2.0-2.29 || OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.

| OpenMPI || 2.1.1-GCC-6.4.0-2.28 || [http://www.open-mpi.org/ OpenMPI] || GCC/6.4.0-2.28, hwloc/1.11.7-GCCcore-6.4.0 || The Open MPI Project is an open source MPI-2 implementation.

| OpenMPI || 2.1.1-GCC-7.2.0-2.29 || [http://www.open-mpi.org/ OpenMPI] || GCC/7.2.0-2.29, hwloc/1.11.7-GCCcore-7.2.0 || The Open MPI Project is an open source MPI-2 implementation.

| OpenMPI || 2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28 || [http://www.open-mpi.org/ OpenMPI] || iccifort/2017.4.196-GCC-6.4.0-2.28, hwloc/1.11.7-GCCcore-6.4.0 || The Open MPI Project is an open source MPI-2 implementation.

| OpenMPI || 2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29 || [http://www.open-mpi.org/ OpenMPI] || iccifort/2018.0.128-GCC-7.2.0-2.29, hwloc/1.11.7-GCCcore-7.2.0 || The Open MPI Project is an open source MPI-2 implementation.

| PCRE || 8.41-GCCcore-7.2.0 || [http://www.pcre.org/ PCRE] || GCCcore/7.2.0, bzip2/1.0.6-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0 || The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl

| PROJ || 4.9.3-foss-2017beocatb || [http://trac.osgeo.org/proj/ PROJ] || foss/2017beocatb || Program proj is a standard Unix filter function which conver

| Pango || 1.40.5-foss-2017beocatb || [http://www.pango.org/ Pango] || foss/2017beocatb, X11/20170314-GCCcore-7.2.0, GLib/2.53.5-GCCcore-7.2.0, cairo/1.14.8-foss-2017beocatb, HarfBuzz/1.3.1-foss-2017beocatb || Pango is a library for laying out and rendering of text, with an emphasis on internationalizati

| ParaView || 5.3.0-foss-2017beocatb-mpi || [http://www.paraview.org ParaView] || foss/2017beocatb, X11/20170314-GCCcore-7.2.0, Mesa/17.0.2-foss-2017beocatb, libGLU/9.0.0-foss-2017beocatb, Qt5/5.8.0-foss-2017beocatb, zlib/1.2.11-GCCcore-7.2.0, HDF5/1.8.19-foss-2017beocatb, Python/2.7.13-foss-2017beocatb || ParaView is a scientific parallel visualizer.

| Perl || 5.26.0-foss-2017beocatb || [https://www.perl.org/ Perl] || foss/2017beocatb || Larry Wall's Practical Extraction and Report Language

| Perl || 5.26.0-iompi-2017beocatb || [https://www.perl.org/ Perl] || iompi/2017beocatb || Larry Wall's Practical Extraction and Report Language

| Python || 2.7.13-GCCcore-7.2.0-bare || [http://python.org/ Python] || GCCcore/7.2.0, bzip2/1.0.6-GCCcore-7.2.0, libreadline/7.0-GCCcore-7.2.0, ncurses/6.0-GCCcore-7.2.0, SQLite/3.20.1-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0 || Python is a programming language that lets you work more quickly and integrate your systems more effective

| Python || 2.7.13-foss-2017beocatb || [http://python.org/ Python] || foss/2017beocatb, bzip2/1.0.6-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0, libreadline/7.0-GCCcore-7.2.0, ncurses/6.0-GCCcore-7.2.0, SQLite/3.20.1-GCCcore-7.2.0, GMP/6.1.2-GCCcore-7.2.0, libffi/3.2.1-GCCcore-7.2.0 || Python is a programming language that lets you work more quickly and integrate your systems more effectively.

| Qhull || 2015.2-foss-2017beocatb || [http://www.qhull.org Qhull] || foss/2017beocatb ||  

| Qt || 4.8.7-foss-2017beocatb || [http://qt.io/ Qt] || foss/2017beocatb, GLib/2.53.5-GCCcore-7.2.0, libpng/1.6.32-GCCcore-7.2.0, X11/20170314-GCCcore-7.2.0, libGLU/9.0.0-foss-2017beocatb || Qt is a comprehensive cross-platform C++ application framework.

| Qt5 || 5.8.0-foss-2017beocatb || [http://qt.io/ Qt5] || foss/2017beocatb, GLib/2.53.5-GCCcore-7.2.0, libpng/1.6.32-GCCcore-7.2.0, X11/20170314-GCCcore-7.2.0, libGLU/9.0.0-foss-2017beocatb || Qt is a comprehensive cross-platform C++ application framework.

| R || 3.4.0-foss-2017beocatb-X11-20170314 || [http://www.r-project.org/ R] || foss/2017beocatb, X11/20170314-GCCcore-7.2.0, Mesa/17.0.2-foss-2017beocatb, libGLU/9.0.0-foss-2017beocatb, cairo/1.14.8-foss-2017beocatb, libreadline/7.0-GCCcore-7.2.0, ncurses/6.0-GCCcore-7.2.0, bzip2/1.0.6-GCCcore-7.2.0, XZ/5.2.3-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0, SQLite/3.20.1-GCCcore-7.2.0, PCRE/8.41-GCCcore-7.2.0, libpng/1.6.32-GCCcore-7.2.0, libjpeg-turbo/1.5.2-GCCcore-7.2.0, LibTIFF/4.0.8-GCCcore-7.2.0, Java/1.8.0_144, Tcl/8.6.7-GCCcore-7.2.0, Tk/8.6.7-foss-2017beocatb, cURL/7.55.1-GCCcore-7.2.0, libxml2/2.9.4-GCCcore-7.2.0, GDAL/2.2.0-foss-2017beocatb-Python-2.7.13, PROJ/4.9.3-foss-2017beocatb, GMP/6.1.2-GCCcore-7.2.0, NLopt/2.4.2-foss-2017beocatb, FFTW/3.3.6-gompi-2017beocatb, libsndfile/1.0.28-foss-2017beocatb || R is a free software environment for statistical computing and graphics.

| SAMtools || 0.1.17-foss-2017beocatb || [http://www.htslib.org/ SAMtools] || foss/2017beocatb, ncurses/6.0-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0 || SAM Tools provide various utilities for manipulating alignments in the SAM format,  including sorting, merging, indexing and generating alignments in a per-position format.

| SAMtools || 1.6-foss-2017beocatb || [http://www.htslib.org/ SAMtools] || foss/2017beocatb, ncurses/6.0-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0, bzip2/1.0.6-GCCcore-7.2.0, XZ/5.2.3-GCCcore-7.2.0 || SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.

| SCOTCH || 6.0.4-foss-2017beocatb || [http://gforge.inria.fr/projects/scotch/ SCOTCH] || foss/2017beocatb, zlib/1.2.11-GCCcore-7.2.0 || Software package and libraries for sequential and parallel graph partitioni

| SCOTCH || 6.0.4-iomkl-2017beocatb || [http://gforge.inria.fr/projects/scotch/ SCOTCH] || iomkl/2017beocatb, zlib/1.2.11-GCCcore-7.2.0 || Software package and libraries for sequential and parallel graph partitioni

| SQLite || 3.20.1-GCCcore-7.2.0 || [http://www.sqlite.org/ SQLite] || GCCcore/7.2.0, libreadline/7.0-GCCcore-7.2.0, Tcl/8.6.7-GCCcore-7.2.0 || SQLite: SQL Database Engine in a C Library

| SWIG || 3.0.12-foss-2017beocatb-Python-2.7.13 || [http://www.swig.org/ SWIG] || foss/2017beocatb, Python/2.7.13-foss-2017beocatb, PCRE/8.41-GCCcore-7.2.0 || SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.

| ScaLAPACK || 2.0.2-gompi-2017b-OpenBLAS-0.2.20 || [http://www.netlib.org/scalapack/ ScaLAPACK] || gompi/2017b, OpenBLAS/0.2.20-GCC-6.4.0-2.28 || The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.

| ScaLAPACK || 2.0.2-gompi-2017beocatb-OpenBLAS-0.2.20 || [http://www.netlib.org/scalapack/ ScaLAPACK] || gompi/2017beocatb, OpenBLAS/0.2.20-GCC-7.2.0-2.29 || The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.

| SuiteSparse || 4.5.5-foss-2017beocatb-METIS-5.1.0 || [http://faculty.cse.tamu.edu/davis/suitesparse.html SuiteSparse] || foss/2017beocatb, METIS/5.1.0-foss-2017beocatb || SuiteSparse is a collection of libraries manipulate sparse matrices.

| Szip || 2.1.1-GCCcore-7.2.0 || [http://www.hdfgroup.org/doc_resource/SZIP/ Szip] || GCCcore/7.2.0 || Szip compression software, providing lossless compression of scientific d

| Tcl || 8.6.7-GCCcore-7.2.0 || [http://www.tcl.tk/ Tcl] || GCCcore/7.2.0, zlib/1.2.11-GCCcore-7.2.0 || Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many mo

| Tk || 8.6.7-foss-2017beocatb || [http://www.tcl.tk/ Tk] || foss/2017beocatb, X11/20170314-GCCcore-7.2.0, Tcl/8.6.7-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0 || Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.

| VASP || 5.4.1-foss-2017beocatb || [http://www.vasp.at VASP] || foss/2017beocatb || The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic sc

| X11 || 20170314-GCCcore-7.2.0 || [https://www.x.org X11] || GCCcore/7.2.0, bzip2/1.0.6-GCCcore-7.2.0, fontconfig/2.12.4-GCCcore-7.2.0, freetype/2.8-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0 || The X Window System (X11) is a windowing system for bitmap displays

| XZ || 5.2.3-GCCcore-7.2.0 || [http://tukaani.org/xz/ XZ] || GCCcore/7.2.0 || xz: XZ utilities

| arpack-ng || 3.5.0-foss-2017beocatb || [http://forge.scilab.org/index.php/p/arpack-ng/ arpack-ng] || foss/2017beocatb || ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.

| binutils || 2.28-GCCcore-6.4.0 || [http://directory.fsf.org/project/binutils/ binutils] || GCCcore/6.4.0 || binutils: GNU binary utilities

| binutils || 2.28 || [http://directory.fsf.org/project/binutils/ binutils] ||  || binutils: GNU binary utilities

| binutils || 2.29-GCCcore-7.2.0 || [http://directory.fsf.org/project/binutils/ binutils] || GCCcore/7.2.0 || binutils: GNU binary utilities

| binutils || 2.29 || [http://directory.fsf.org/project/binutils/ binutils] ||  || binutils: GNU binary utilities

| bzip2 || 1.0.6-GCCcore-7.2.0 || [http://www.bzip.org/ bzip2] || GCCcore/7.2.0 || bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.

| cURL || 7.55.1-GCCcore-7.2.0 || [http://curl.haxx.se cURL] || GCCcore/7.2.0, zlib/1.2.11-GCCcore-7.2.0 || libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and mo

| cairo || 1.14.8-foss-2017beocatb || [http://cairographics.org cairo] || foss/2017beocatb, bzip2/1.0.6-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0, libpng/1.6.32-GCCcore-7.2.0, freetype/2.8-GCCcore-7.2.0, pixman/0.34.0-GCCcore-7.2.0, expat/2.2.4-GCCcore-7.2.0, GLib/2.53.5-GCCcore-7.2.0, X11/20170314-GCCcore-7.2.0 || Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB

| expat || 2.2.4-GCCcore-7.2.0 || [http://expat.sourceforge.net/ expat] || GCCcore/7.2.0 || Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start ta

| flex || 2.6.3 || [http://flex.sourceforge.net/ flex] || M4/1.4.18 || Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner,  sometimes called a tokenizer, is a program which recognizes lexical patterns in text.

| flex || 2.6.4-GCCcore-6.4.0 || [http://flex.sourceforge.net/ flex] || GCCcore/6.4.0, M4/1.4.18-GCCcore-6.4.0 || Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in te

| flex || 2.6.4-GCCcore-7.2.0 || [http://flex.sourceforge.net/ flex] || GCCcore/7.2.0, M4/1.4.18-GCCcore-7.2.0 || Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner,  sometimes called a tokenizer, is a program which recognizes lexical patterns in te

| flex || 2.6.4 || [http://flex.sourceforge.net/ flex] || M4/1.4.18 || Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in te

| fontconfig || 2.12.4-GCCcore-7.2.0 || [http://www.freedesktop.org/software/fontconfig fontconfig] || GCCcore/7.2.0, expat/2.2.4-GCCcore-7.2.0, freetype/2.8-GCCcore-7.2.0 || Fontconfig is a library designed to provide system-wide font configuration, customization and application acce

| foss || 2017b || [(none) foss] || GCC/6.4.0-2.28, OpenMPI/2.1.1-GCC-6.4.0-2.28, OpenBLAS/0.2.20-GCC-6.4.0-2.28, FFTW/3.3.6-gompi-2017b, ScaLAPACK/2.0.2-gompi-2017b-OpenBLAS-0.2.20 || GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

| foss || 2017beocatb || [(none) foss] || GCC/7.2.0-2.29, OpenMPI/2.1.1-GCC-7.2.0-2.29, OpenBLAS/0.2.20-GCC-7.2.0-2.29, FFTW/3.3.6-gompi-2017beocatb, ScaLAPACK/2.0.2-gompi-2017beocatb-OpenBLAS-0.2.20 || GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

| freeglut || 3.0.0-foss-2017beocatb || [http://freeglut.sourceforge.net/ freeglut] || foss/2017beocatb, X11/20170314-GCCcore-7.2.0, libGLU/9.0.0-foss-2017beocatb, Mesa/17.0.2-foss-2017beocatb || freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.

| freetype || 2.8-GCCcore-7.2.0 || [http://freetype.org freetype] || GCCcore/7.2.0, bzip2/1.0.6-GCCcore-7.2.0, libpng/1.6.32-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0 || FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as we

| gettext || 0.19.8.1-GCCcore-7.2.0 || [http://www.gnu.org/software/gettext/ gettext] || GCCcore/7.2.0, libxml2/2.9.4-GCCcore-7.2.0, ncurses/6.0-GCCcore-7.2.0 || GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we

| gettext || 0.19.8.1 || [http://www.gnu.org/software/gettext/ gettext] || ncurses/6.0 || GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we

| gmvapich2 || 2017beocatb || [(none) gmvapich2] || GCC/7.2.0-2.29, MVAPICH2/2.3b-GCC-7.2.0-2.29 || GNU Compiler Collection (GCC) based compiler toolchain, including MVAPICH2 for MPI support.

| gnuplot || 5.0.6-foss-2017beocatb || [http://gnuplot.sourceforge.net/ gnuplot] || foss/2017beocatb, cairo/1.14.8-foss-2017beocatb, libjpeg-turbo/1.5.2-GCCcore-7.2.0, libpng/1.6.32-GCCcore-7.2.0, libgd/2.2.4-GCCcore-7.2.0, Pango/1.40.5-foss-2017beocatb, libcerf/1.5-GCCcore-7.2.0, Qt5/5.8.0-foss-2017beocatb || Portable interactive, function plotting utility

| gompi || 2017b || [(none) gompi] || GCC/6.4.0-2.28, OpenMPI/2.1.1-GCC-6.4.0-2.28 || GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.

| gompi || 2017beocatb || [(none) gompi] || GCC/7.2.0-2.29, OpenMPI/2.1.1-GCC-7.2.0-2.29 || GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.

| gperf || 3.1-GCCcore-7.2.0 || [http://www.gnu.org/software/gperf/ gperf] || GCCcore/7.2.0 || GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison on

| help2man || 1.47.4-GCCcore-6.4.0 || [https://www.gnu.org/software/help2man/ help2man] || GCCcore/6.4.0 || help2man produces simple manual pages from the '--help' and '--version' output of other comman

| help2man || 1.47.4-GCCcore-7.2.0 || [https://www.gnu.org/software/help2man/ help2man] || GCCcore/7.2.0 || help2man produces simple manual pages from the '--help' and '--version' output of other commands.

| help2man || 1.47.4 || [https://www.gnu.org/software/help2man/ help2man] ||  || help2man produces simple manual pages from the '--help' and '--version' output of other commands.

| hwloc || 1.11.7-GCCcore-6.4.0 || [http://www.open-mpi.org/projects/hwloc/ hwloc] || GCCcore/6.4.0, numactl/2.0.11-GCCcore-6.4.0 || The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficient

| hwloc || 1.11.7-GCCcore-7.2.0 || [http://www.open-mpi.org/projects/hwloc/ hwloc] || GCCcore/7.2.0, numactl/2.0.11-GCCcore-7.2.0 || The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficient

| icc || 2017.4.196-GCC-6.4.0-2.28 || [http://software.intel.com/en-us/intel-compilers/ icc] || GCCcore/6.4.0, binutils/2.28-GCCcore-6.4.0 || Intel C and C++ compilers

| icc || 2018.0.128-GCC-7.2.0-2.29 || [http://software.intel.com/en-us/intel-compilers/ icc] || GCCcore/7.2.0, binutils/2.29-GCCcore-7.2.0 || Intel C and C++ compilers

| iccifort || 2017.4.196-GCC-6.4.0-2.28 || [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iccifort] || icc/2017.4.196-GCC-6.4.0-2.28, ifort/2017.4.196-GCC-6.4.0-2.28 || Intel C, C++ & Fortran compilers

| iccifort || 2018.0.128-GCC-7.2.0-2.29 || [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iccifort] || icc/2018.0.128-GCC-7.2.0-2.29, ifort/2018.0.128-GCC-7.2.0-2.29 || Intel C, C++ & Fortran compilers

| ifort || 2017.4.196-GCC-6.4.0-2.28 || [http://software.intel.com/en-us/intel-compilers/ ifort] || GCCcore/6.4.0, binutils/2.28-GCCcore-6.4.0 || Intel Fortran compiler

| ifort || 2018.0.128-GCC-7.2.0-2.29 || [http://software.intel.com/en-us/intel-compilers/ ifort] || GCCcore/7.2.0, binutils/2.29-GCCcore-7.2.0 || Intel Fortran compiler

| imkl || 2017.3.196-iompi-2017b || [http://software.intel.com/en-us/intel-mkl/ imkl] || iompi/2017b || Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.

| imkl || 2018.0.128-iompi-2017beocatb || [http://software.intel.com/en-us/intel-mkl/ imkl] || iompi/2017beocatb || Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.

| iomkl || 2017b || [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iomkl] || icc/2017.4.196-GCC-6.4.0-2.28, ifort/2017.4.196-GCC-6.4.0-2.28, OpenMPI/2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28, imkl/2017.3.196-iompi-2017b || Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.

| iomkl || 2017beocatb || [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iomkl] || icc/2018.0.128-GCC-7.2.0-2.29, ifort/2018.0.128-GCC-7.2.0-2.29, OpenMPI/2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29, imkl/2018.0.128-iompi-2017beocatb || Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.

| iompi || 2017b || [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iompi] || icc/2017.4.196-GCC-6.4.0-2.28, ifort/2017.4.196-GCC-6.4.0-2.28, OpenMPI/2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28 || Intel C/C++ and Fortran compilers, alongside Open MPI.

| iompi || 2017beocatb || [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iompi] || icc/2018.0.128-GCC-7.2.0-2.29, ifort/2018.0.128-GCC-7.2.0-2.29, OpenMPI/2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29 || Intel C/C++ and Fortran compilers, alongside Open MPI.

| ipp || 2018.0.128 || [http://software.intel.com/en-us/articles/intel-ipp/ ipp] ||  || Intel Integrated Performance Primitives (Intel IPP) is an extensive library of multicore-ready, highly optimized software functions for multimedia, data processing, and communications applications. Intel IPP offers thousands of optimized functions covering frequently used fundamental algorithms.

| libGLU || 9.0.0-foss-2017beocatb || [ftp://ftp.freedesktop.org/pub/mesa/glu/ libGLU] || foss/2017beocatb, Mesa/17.0.2-foss-2017beocatb || The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.

| libcerf || 1.5-GCCcore-7.2.0 || [http://apps.jcns.fz-juelich.de/doku/sc/libcerf libcerf] || GCCcore/7.2.0 || libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functio

| libdrm || 2.4.76-GCCcore-7.2.0 || [http://dri.freedesktop.org libdrm] || GCCcore/7.2.0, X11/20170314-GCCcore-7.2.0 || Direct Rendering Manager runtime library.

| libffi || 3.2.1-GCCcore-7.2.0 || [http://sourceware.org/libffi/ libffi] || GCCcore/7.2.0 || The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-ti

| libgd || 2.2.4-GCCcore-7.2.0 || [https://libgd.github.io/ libgd] || GCCcore/7.2.0, fontconfig/2.12.4-GCCcore-7.2.0, libjpeg-turbo/1.5.2-GCCcore-7.2.0, libpng/1.6.32-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0 || GD is an open source code library for the dynamic creation of images by programmers.

| libjpeg-turbo || 1.5.2-GCCcore-7.2.0 || [http://sourceforge.net/projects/libjpeg-turbo/ libjpeg-turbo] || GCCcore/7.2.0, NASM/2.13.01-GCCcore-7.2.0 || libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcodi

| libpng || 1.6.32-GCCcore-7.2.0 || [http://www.libpng.org/pub/png/libpng.html libpng] || GCCcore/7.2.0, zlib/1.2.11-GCCcore-7.2.0 || libpng is the official PNG reference library

| libreadline || 7.0-GCCcore-7.2.0 || [http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html libreadline] || GCCcore/7.2.0, ncurses/6.0-GCCcore-7.2.0 || The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous comman

| libsndfile || 1.0.28-foss-2017beocatb || [http://www.mega-nerd.com/libsndfile libsndfile] || foss/2017beocatb || Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.

| libtool || 2.4.6-GCCcore-7.2.0 || [http://www.gnu.org/software/libtool libtool] || GCCcore/7.2.0, M4/1.4.18-GCCcore-7.2.0 || GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interfa

| libxml2 || 2.9.4-GCCcore-7.2.0 || [http://xmlsoft.org/ libxml2] || GCCcore/7.2.0, zlib/1.2.11-GCCcore-7.2.0, XZ/5.2.3-GCCcore-7.2.0 || Libxml2 is the XML C parser a

| libxml2 || 2.9.4-foss-2017beocatb-Python-2.7.13 || [http://xmlsoft.org/ libxml2] || foss/2017beocatb, zlib/1.2.11-GCCcore-7.2.0, XZ/5.2.3-GCCcore-7.2.0, Python/2.7.13-foss-2017beocatb || Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).

| libxslt || 1.1.32-foss-2017beocatb || [http://xmlsoft.org/ libxslt] || foss/2017beocatb, zlib/1.2.11-GCCcore-7.2.0, libxml2/2.9.4-GCCcore-7.2.0 || Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).

| ncurses || 6.0-GCCcore-7.2.0 || [http://www.gnu.org/software/ncurses/ ncurses] || GCCcore/7.2.0 || The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curs

| ncurses || 6.0 || [http://www.gnu.org/software/ncurses/ ncurses] ||  || The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.

| netCDF || 4.4.1.1-foss-2017beocatb || [http://www.unidata.ucar.edu/software/netcdf/ netCDF] || foss/2017beocatb, HDF5/1.8.19-foss-2017beocatb, cURL/7.55.1-GCCcore-7.2.0, Szip/2.1.1-GCCcore-7.2.0 || NetCDF (network Common Data Form) is a set of software libraries  and machine-independent data formats that support the creation, access, and sharing of array-oriented  scientific data.

| nettle || 3.3-GCCcore-7.2.0 || [http://www.lysator.liu.se/~nisse/nettle/ nettle] || GCCcore/7.2.0, GMP/6.1.2-GCCcore-7.2.0 || Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel spa

| numactl || 2.0.11-GCCcore-6.4.0 || [http://oss.sgi.com/projects/libnuma/ numactl] || GCCcore/6.4.0 || The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own progr

| numactl || 2.0.11-GCCcore-7.2.0 || [http://oss.sgi.com/projects/libnuma/ numactl] || GCCcore/7.2.0 || The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own progr

| pixman || 0.34.0-GCCcore-7.2.0 || [http://www.pixman.org/ pixman] || GCCcore/7.2.0 || Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X serv

| pkg-config || 0.29.2-GCCcore-7.2.0 || [http://www.freedesktop.org/wiki/Software/pkg-config/ pkg-config] || GCCcore/7.2.0 || pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other librarie

| qrupdate || 1.1.2-foss-2017beocatb || [https://sourceforge.net/projects/qrupdate/ qrupdate] || foss/2017beocatb || qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions.

| sparsehash || 2.0.3-GCCcore-7.2.0 || [https://github.com/sparsehash/sparsehash sparsehash] || GCCcore/7.2.0 || An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or spe

| sparsehash || 2.0.3-iccifort-2018.0.128-GCC-7.2.0-2.29 || [https://github.com/sparsehash/sparsehash sparsehash] || iccifort/2018.0.128-GCC-7.2.0-2.29 || An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed.

| tbb || 2018.0.128 || [http://software.intel.com/en-us/articles/intel-tbb/ tbb] ||  || Intel Threading Building Blocks (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based parallel applications that scale to available processor cores, are compatible with multiple environments, and are easier to maintain. Intel TBB is the most proficient way to implement future-proof parallel applications that tap into the power and performance of multicore and manycore hardware platfor

| util-linux || 2.30.1-GCCcore-7.2.0 || [http://www.kernel.org/pub/linux/utils/util-linux util-linux] || GCCcore/7.2.0, ncurses/6.0-GCCcore-7.2.0, zlib/1.2.11-GCCcore-7.2.0 || Set of Linux utilities

| xprop || 1.2.2-GCCcore-7.2.0 || [http://www.x.org/wiki/ xprop] || GCCcore/7.2.0, X11/20170314-GCCcore-7.2.0 || The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.

| zlib || 1.2.11-GCCcore-6.4.0 || [http://www.zlib.net/ zlib] || GCCcore/6.4.0 || zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating syst

| zlib || 1.2.11-GCCcore-7.2.0 || [http://www.zlib.net/ zlib] || GCCcore/7.2.0 || zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.

| zlib || 1.2.11 || [http://www.zlib.net/ zlib] ||  || zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.