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| [https://www.continuum.io/anaconda-overview Anaconda3] || 5.0.1 ||  || Built to complement the rich, open source Python communi
 
| [https://www.continuum.io/anaconda-overview Anaconda3] || 5.0.1 ||  || Built to complement the rich, open source Python communi
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|-
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| [http://www.gnu.org/software/autoconf/ Autoconf] || 2.69-GCCcore-6.3.0 ||
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{|
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|-
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|GCCcore/6.3.0
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|-
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|M4/1.4.18-GCCcore-6.3.0
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|}
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|| Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
 
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| [http://www.gnu.org/software/autoconf/ Autoconf] || 2.69-GCCcore-7.2.0 ||  
 
| [http://www.gnu.org/software/autoconf/ Autoconf] || 2.69-GCCcore-7.2.0 ||  
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|}
 
|}
 
  || Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro cal
 
  || Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro cal
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| [http://www.gnu.org/software/automake/automake.html Automake] || 1.15-GCCcore-6.3.0 ||
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{|
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|-
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|Autoconf/2.69-GCCcore-6.3.0
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|-
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|GCCcore/6.3.0
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|}
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|| Automake: GNU Standards-compliant Makefile generator
 
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| [http://www.gnu.org/software/automake/automake.html Automake] || 1.15.1-GCCcore-7.2.0 ||  
 
| [http://www.gnu.org/software/automake/automake.html Automake] || 1.15.1-GCCcore-7.2.0 ||  
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|}
 
|}
 
  || Automake: GNU Standards-compliant Makefile generator
 
  || Automake: GNU Standards-compliant Makefile generator
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|-
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| [http://autotools.io Autotools] || 20150215-GCCcore-6.3.0 ||
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{|
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|-
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|Autoconf/2.69-GCCcore-6.3.0
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|-
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|Automake/1.15-GCCcore-6.3.0
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|-
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|GCCcore/6.3.0
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|-
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|libtool/2.4.6-GCCcore-6.3.0
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|}
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|| This bundle collect the standard GNU build tools: Autoconf, Automake and libtool
 
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|-
 
| [http://autotools.io Autotools] || 20170619-GCCcore-7.2.0 ||  
 
| [http://autotools.io Autotools] || 20170619-GCCcore-7.2.0 ||  
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|}
 
  || Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.
 
  || Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.
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|-
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| [http://www.gnu.org/software/bison Bison] || 3.0.4-GCCcore-6.3.0 || GCCcore/6.3.0 || Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
 
|-
 
|-
 
| [http://www.gnu.org/software/bison Bison] || 3.0.4-GCCcore-6.4.0 || GCCcore/6.4.0 || Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tabl
 
| [http://www.gnu.org/software/bison Bison] || 3.0.4-GCCcore-6.4.0 || GCCcore/6.4.0 || Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tabl
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|-
 
|-
 
| [http://www.gnu.org/software/bison Bison] || 3.0.4 ||  || Bison is a general-purpose parser generator that converts an annotated context-free gram
 
| [http://www.gnu.org/software/bison Bison] || 3.0.4 ||  || Bison is a general-purpose parser generator that converts an annotated context-free gram
 +
|-
 +
| [http://www.boost.org/ Boost] || 1.58.0-iomkl-2017a ||
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{|
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|-
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|bzip2/1.0.6-GCCcore-6.3.0
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|-
 +
|iomkl/2017a
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|-
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|zlib/1.2.11-GCCcore-6.3.0
 +
|}
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|| Boost provides free peer-reviewed portable C++ source libraries.
 
|-
 
|-
 
| [http://www.boost.org/ Boost] || 1.63.0-foss-2017beocatb-Python-2.7.13 ||  
 
| [http://www.boost.org/ Boost] || 1.63.0-foss-2017beocatb-Python-2.7.13 ||  
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  || Boost provides free peer-reviewed portable C++ source libraries.
 
  || Boost provides free peer-reviewed portable C++ source libraries.
 
|-
 
|-
| [http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie2] || 2.3.3.1-foss-2017beocatb ||  
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| [http://bowtie-bio.sourceforge.net/index.shtml Bowtie] || 1.2.1.1-foss-2017beocatb ||
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{|
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|-
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|foss/2017beocatb
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|-
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|tbb/2018.0.128
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|}
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|| Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome.
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|-
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| [http://bowtie-bio.sourceforge.net/bowtie2/index.shtml Bowtie2] || 2.3.3.1-foss-2017beocatb ||  
 
{|
 
{|
 
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|-
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|-
 
|-
 
|libGLU/9.0.0-foss-2017beocatb
 
|libGLU/9.0.0-foss-2017beocatb
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|-
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|zlib/1.2.11-GCCcore-7.2.0
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|}
 +
|| The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
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|-
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| [http://www.cgal.org/ CGAL] || 4.9-iomkl-2017beocatb ||
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{|
 +
|-
 +
|Boost/1.63.0-iomkl-2017beocatb-Python-2.7.13
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|-
 +
|GMP/6.1.2-GCCcore-7.2.0
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|-
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|MPFR/3.1.5-GCCcore-7.2.0
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|-
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|Python/2.7.13-iomkl-2017beocatb
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|-
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|Qt/4.8.7-iomkl-2017beocatb
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|-
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|iomkl/2017beocatb
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|-
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|libGLU/9.0.0-iomkl-2017beocatb
 
|-
 
|-
 
|zlib/1.2.11-GCCcore-7.2.0
 
|zlib/1.2.11-GCCcore-7.2.0
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|-
 
|-
 
| [http://www.oracle.com/technetwork/products/berkeleydb DB] || 6.2.32-GCCcore-7.2.0 || GCCcore/7.2.0 || Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projec
 
| [http://www.oracle.com/technetwork/products/berkeleydb DB] || 6.2.32-GCCcore-7.2.0 || GCCcore/7.2.0 || Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projec
 +
|-
 +
| [http://www.oracle.com/technetwork/products/berkeleydb DB] || 6.2.32-iomkl-2017a || iomkl/2017a || Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.
 
|-
 
|-
 
| [http://www.doxygen.org Doxygen] || 1.8.13-GCCcore-7.2.0 || GCCcore/7.2.0 || Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent
 
| [http://www.doxygen.org Doxygen] || 1.8.13-GCCcore-7.2.0 || GCCcore/7.2.0 || Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent
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|-
 
|-
 
| [http://eigen.tuxfamily.org/index.php?title=Main_Page Eigen] || 3.3.4-GCCcore-7.2.0 || GCCcore/7.2.0 || Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
 
| [http://eigen.tuxfamily.org/index.php?title=Main_Page Eigen] || 3.3.4-GCCcore-7.2.0 || GCCcore/7.2.0 || Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
 +
|-
 +
| [http://www.fftw.org FFTW] || 3.3.6-gompi-2017a || gompi/2017a || FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
 
|-
 
|-
 
| [http://www.fftw.org FFTW] || 3.3.6-gompi-2017b || gompi/2017b || FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
 
| [http://www.fftw.org FFTW] || 3.3.6-gompi-2017b || gompi/2017b || FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
 
|-
 
|-
 
| [http://www.fftw.org FFTW] || 3.3.6-gompi-2017beocatb || gompi/2017beocatb || FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
 
| [http://www.fftw.org FFTW] || 3.3.6-gompi-2017beocatb || gompi/2017beocatb || FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
 +
|-
 +
| [http://www.fftw.org FFTW] || 3.3.6-iomkl-2017b || iomkl/2017b || FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
 +
|-
 +
| [http://www.fftw.org FFTW] || 3.3.6-iomkl-2017beocatb || iomkl/2017beocatb || FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
 
|-
 
|-
 
| [http://www.fltk.org FLTK] || 1.3.4-foss-2017beocatb ||  
 
| [http://www.fltk.org FLTK] || 1.3.4-foss-2017beocatb ||  
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|-
 
|-
 
| GC3Pie || 2.4.2 ||  || GC3Pie is a Python package for running large job campaigns on diverse batch-oriented execution environments. - Homepage: https://gc3pie.readthedocs.org
 
| GC3Pie || 2.4.2 ||  || GC3Pie is a Python package for running large job campaigns on diverse batch-oriented execution environments. - Homepage: https://gc3pie.readthedocs.org
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|-
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| [http://gcc.gnu.org/ GCC] || 6.3.0-2.27 ||
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{|
 +
|-
 +
|GCCcore/6.3.0
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|-
 +
|binutils/2.27-GCCcore-6.3.0
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|}
 +
|| The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
 
|-
 
|-
 
| [http://gcc.gnu.org/ GCC] || 6.4.0-2.28 ||  
 
| [http://gcc.gnu.org/ GCC] || 6.4.0-2.28 ||  
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|}
 
|}
 
  || The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
 
  || The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
 +
|-
 +
| [http://gcc.gnu.org/ GCCcore] || 6.3.0 ||  || The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
 
|-
 
|-
 
| [http://gcc.gnu.org/ GCCcore] || 6.4.0 ||  || The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).  [NOTE: This module does not include Objective-C, Java or A
 
| [http://gcc.gnu.org/ GCCcore] || 6.4.0 ||  || The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).  [NOTE: This module does not include Objective-C, Java or A
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|}
 
|}
 
  || GLib is one of the base libraries of the GTK+ project
 
  || GLib is one of the base libraries of the GTK+ project
 +
|-
 +
| [http://gmplib.org/ GMP] || 6.1.2-GCCcore-6.3.0 || GCCcore/6.3.0 || GMP is a free library for arbitrary precision arithmet
 
|-
 
|-
 
| [http://gmplib.org/ GMP] || 6.1.2-GCCcore-7.2.0 || GCCcore/7.2.0 || GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbe
 
| [http://gmplib.org/ GMP] || 6.1.2-GCCcore-7.2.0 || GCCcore/7.2.0 || GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbe
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  || HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.
 
  || HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.
 
|-
 
|-
| [http://www.htslib.org/ HTSlib] || 1.6-foss-2017beocatb ||  
+
| [https://support.hdfgroup.org/HDF5/ HDF5] || 1.8.19-iomkl-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|XZ/5.2.3-GCCcore-7.2.0
+
|Szip/2.1.1-GCCcore-7.2.0
 
|-
 
|-
|bzip2/1.0.6-GCCcore-7.2.0
+
|iomkl/2017beocatb
|-
 
|cURL/7.55.1-GCCcore-7.2.0
 
|-
 
|foss/2017beocatb
 
 
|-
 
|-
 
|zlib/1.2.11-GCCcore-7.2.0
 
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
+
  || HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.
 
|-
 
|-
| [http://www.freedesktop.org/wiki/Software/HarfBuzz HarfBuzz] || 1.3.1-foss-2017beocatb ||  
+
| [http://www.htslib.org/ HTSlib] || 1.4.1-iomkl-2017a ||  
 
{|
 
{|
 
|-
 
|-
|GLib/2.53.5-GCCcore-7.2.0
+
|XZ/5.2.3-GCCcore-6.3.0
 +
|-
 +
|bzip2/1.0.6-GCCcore-6.3.0
 
|-
 
|-
|cairo/1.14.8-foss-2017beocatb
+
|cURL/7.53.1-GCCcore-6.3.0
 
|-
 
|-
|foss/2017beocatb
+
|iomkl/2017a
 
|-
 
|-
|freetype/2.8-GCCcore-7.2.0
+
|zlib/1.2.11-GCCcore-6.3.0
 
|}
 
|}
  || HarfBuzz is an OpenType text shaping engine.
+
  || A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
 
|-
 
|-
| [http://www.ece.uvic.ca/~frodo/jasper/ JasPer] || 2.0.12-foss-2017beocatb || foss/2017beocatb || The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
+
| [http://www.htslib.org/ HTSlib] || 1.6-foss-2017beocatb ||  
 +
{|
 
|-
 
|-
| [http://java.com/ Java] || 1.8.0_131 ||  || Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
+
|XZ/5.2.3-GCCcore-7.2.0
 
|-
 
|-
| [http://java.com/ Java] || 1.8.0_144 ||  || Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and serve
+
|bzip2/1.0.6-GCCcore-7.2.0
 
|-
 
|-
| [http://llvm.org/ LLVM] || 4.0.1-foss-2017beocatb ||
+
|cURL/7.55.1-GCCcore-7.2.0
{|
 
 
|-
 
|-
 
|foss/2017beocatb
 
|foss/2017beocatb
|-
 
|ncurses/6.0-GCCcore-7.2.0
 
 
|-
 
|-
 
|zlib/1.2.11-GCCcore-7.2.0
 
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
+
  || A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
 
|-
 
|-
| [http://www.remotesensing.org/libtiff/ LibTIFF] || 4.0.8-GCCcore-7.2.0 || GCCcore/7.2.0 || tiff: Library and tools for reading and writing TIFF data files
+
| [http://www.freedesktop.org/wiki/Software/HarfBuzz HarfBuzz] || 1.3.1-foss-2017beocatb ||  
 +
{|
 
|-
 
|-
| [http://www.gnu.org/software/m4/m4.html M4] || 1.4.17 ||  || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions  (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e
+
|GLib/2.53.5-GCCcore-7.2.0
 
|-
 
|-
| [http://www.gnu.org/software/m4/m4.html M4] || 1.4.18-GCCcore-6.4.0 || GCCcore/6.4.0 || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e
+
|cairo/1.14.8-foss-2017beocatb
 
|-
 
|-
| [http://www.gnu.org/software/m4/m4.html M4] || 1.4.18-GCCcore-7.2.0 || GCCcore/7.2.0 || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible  although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
+
|foss/2017beocatb
 
|-
 
|-
| [http://www.gnu.org/software/m4/m4.html M4] || 1.4.18 || || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions  (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e
+
|freetype/2.8-GCCcore-7.2.0
 +
|}
 +
|| HarfBuzz is an OpenType text shaping engine.
 +
|-
 +
| [http://www.ece.uvic.ca/~frodo/jasper/ JasPer] || 2.0.12-foss-2017beocatb || foss/2017beocatb || The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
 
|-
 
|-
| [http://glaros.dtc.umn.edu/gkhome/metis/metis/overview METIS] || 5.1.0-foss-2017beocatb || foss/2017beocatb || METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
+
| [http://java.com/ Java] || 1.8.0_131 || || Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
 
|-
 
|-
| [http://glaros.dtc.umn.edu/gkhome/metis/metis/overview METIS] || 5.1.0-iomkl-2017beocatb || iomkl/2017beocatb || METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
+
| [http://java.com/ Java] || 1.8.0_144 || || Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and serve
 
|-
 
|-
| [http://www.mpfr.org MPFR] || 3.1.5-GCCcore-7.2.0 ||  
+
| [http://llvm.org/ LLVM] || 4.0.1-foss-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/7.2.0
+
|foss/2017beocatb
 +
|-
 +
|ncurses/6.0-GCCcore-7.2.0
 
|-
 
|-
|GMP/6.1.2-GCCcore-7.2.0
+
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || The MPFR library is a C library for multiple-precision floating-point computations with correct roundi
+
  || The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
 
|-
 
|-
| [http://mvapich.cse.ohio-state.edu/overview/mvapich2/ MVAPICH2] || 2.3b-GCC-7.2.0-2.29 || GCC/7.2.0-2.29 || This is an MPI 3.0 implementation.  It is based on MPICH2 and MVICH.
+
| [http://llvm.org/ LLVM] || 4.0.1-iomkl-2017beocatb ||  
 +
{|
 
|-
 
|-
| [http://www.makotemplates.org Mako] || 1.0.6-foss-2017beocatb-Python-2.7.13 ||
+
|iomkl/2017beocatb
{|
 
 
|-
 
|-
|Python/2.7.13-foss-2017beocatb
+
|ncurses/6.0-GCCcore-7.2.0
 
|-
 
|-
|foss/2017beocatb
+
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || A super-fast templating language that borrows the best ideas from the existing templating languages
+
  || The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
 
|-
 
|-
| [http://www.mesa3d.org/ Mesa] || 17.0.2-foss-2017beocatb ||  
+
| [http://www.remotesensing.org/libtiff/ LibTIFF] || 4.0.8-GCCcore-7.2.0 || GCCcore/7.2.0 || tiff: Library and tools for reading and writing TIFF data files
{|
 
 
|-
 
|-
|LLVM/4.0.1-foss-2017beocatb
+
| [http://www.gnu.org/software/m4/m4.html M4] || 1.4.17 ||  || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions  (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e
 
|-
 
|-
|X11/20170314-GCCcore-7.2.0
+
| [http://www.gnu.org/software/m4/m4.html M4] || 1.4.18-GCCcore-6.3.0 || GCCcore/6.3.0 || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible  although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
 
|-
 
|-
|foss/2017beocatb
+
| [http://www.gnu.org/software/m4/m4.html M4] || 1.4.18-GCCcore-6.4.0 || GCCcore/6.4.0 || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e
 
|-
 
|-
|libdrm/2.4.76-GCCcore-7.2.0
+
| [http://www.gnu.org/software/m4/m4.html M4] || 1.4.18-GCCcore-7.2.0 || GCCcore/7.2.0 || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible  although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
 
|-
 
|-
|nettle/3.3-GCCcore-7.2.0
+
| [http://www.gnu.org/software/m4/m4.html M4] || 1.4.18 ||  || GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions  (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
| [http://glaros.dtc.umn.edu/gkhome/metis/metis/overview METIS] || 5.1.0-foss-2017beocatb || foss/2017beocatb || METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
|}
 
|| Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
 
 
|-
 
|-
| [http://www.nasm.us/ NASM] || 2.13.01-GCCcore-7.2.0 || GCCcore/7.2.0 || NASM: General-purpose x86 assembler
+
| [http://glaros.dtc.umn.edu/gkhome/metis/metis/overview METIS] || 5.1.0-iomkl-2017beocatb || iomkl/2017beocatb || METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
 
|-
 
|-
| [http://ab-initio.mit.edu/wiki/index.php/NLopt NLopt] || 2.4.2-foss-2017beocatb || foss/2017beocatb || NLopt is a free/open-source library for nonlinear optimization,  providing a common interface for a number of different free optimization routines  available online as well as original implementations of various other algorithms.
+
| [http://www.mpfr.org MPFR] || 3.1.5-GCCcore-7.2.0 ||  
|-
 
| [http://www.gnu.org/software/octave/ Octave] || 4.2.1-foss-2017beocatb ||  
 
 
{|
 
{|
 
|-
 
|-
|FFTW/3.3.6-gompi-2017beocatb
+
|GCCcore/7.2.0
 
|-
 
|-
|FLTK/1.3.4-foss-2017beocatb
+
|GMP/6.1.2-GCCcore-7.2.0
 +
|}
 +
|| The MPFR library is a C library for multiple-precision floating-point computations with correct roundi
 
|-
 
|-
|GL2PS/1.4.0-foss-2017beocatb
+
| [http://mvapich.cse.ohio-state.edu/overview/mvapich2/ MVAPICH2] || 2.3b-GCC-7.2.0-2.29 || GCC/7.2.0-2.29 || This is an MPI 3.0 implementation.  It is based on MPICH2 and MVICH.
 
|-
 
|-
|GLPK/4.61-foss-2017beocatb
+
| [http://www.makotemplates.org Mako] || 1.0.6-foss-2017beocatb-Python-2.7.13 ||
 +
{|
 
|-
 
|-
|GraphicsMagick/1.3.25-foss-2017beocatb
+
|Python/2.7.13-foss-2017beocatb
 
|-
 
|-
|HDF5/1.8.19-foss-2017beocatb
+
|foss/2017beocatb
 +
|}
 +
|| A super-fast templating language that borrows the best ideas from the existing templating languages
 
|-
 
|-
|Java/1.8.0_144
+
| [http://www.makotemplates.org Mako] || 1.0.6-iomkl-2017beocatb-Python-2.7.13 ||
 +
{|
 
|-
 
|-
|Mesa/17.0.2-foss-2017beocatb
+
|Python/2.7.13-iomkl-2017beocatb
 
|-
 
|-
|PCRE/8.41-GCCcore-7.2.0
+
|iomkl/2017beocatb
 +
|}
 +
|| A super-fast templating language that borrows the best ideas from the existing templating languages
 
|-
 
|-
|Qhull/2015.2-foss-2017beocatb
+
| [http://www.mesa3d.org/ Mesa] || 17.0.2-foss-2017beocatb ||
 +
{|
 
|-
 
|-
|Qt5/5.8.0-foss-2017beocatb
+
|LLVM/4.0.1-foss-2017beocatb
|-
 
|SuiteSparse/4.5.5-foss-2017beocatb-METIS-5.1.0
 
 
|-
 
|-
 
|X11/20170314-GCCcore-7.2.0
 
|X11/20170314-GCCcore-7.2.0
 
|-
 
|-
|arpack-ng/3.5.0-foss-2017beocatb
+
|foss/2017beocatb
 
|-
 
|-
|cURL/7.55.1-GCCcore-7.2.0
+
|libdrm/2.4.76-GCCcore-7.2.0
 
|-
 
|-
|fontconfig/2.12.4-GCCcore-7.2.0
+
|nettle/3.3-GCCcore-7.2.0
 
|-
 
|-
|foss/2017beocatb
+
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
|| Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
 
|-
 
|-
|freetype/2.8-GCCcore-7.2.0
+
| [http://www.mesa3d.org/ Mesa] || 17.0.2-iomkl-2017beocatb ||
 +
{|
 
|-
 
|-
|gnuplot/5.0.6-foss-2017beocatb
+
|LLVM/4.0.1-iomkl-2017beocatb
 
|-
 
|-
|libGLU/9.0.0-foss-2017beocatb
+
|X11/20170314-GCCcore-7.2.0
 
|-
 
|-
|libreadline/7.0-GCCcore-7.2.0
+
|iomkl/2017beocatb
 
|-
 
|-
|ncurses/6.0-GCCcore-7.2.0
+
|libdrm/2.4.76-GCCcore-7.2.0
 
|-
 
|-
|qrupdate/1.1.2-foss-2017beocatb
+
|nettle/3.3-GCCcore-7.2.0
 
|-
 
|-
 
|zlib/1.2.11-GCCcore-7.2.0
 
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || GNU Octave is a high-level interpreted language, primarily intended for numerical computations.
+
  || Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
 
|-
 
|-
| [http://xianyi.github.com/OpenBLAS/ OpenBLAS] || 0.2.20-GCC-6.4.0-2.28 || GCC/6.4.0-2.28 || OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
+
| [http://www.ks.uiuc.edu/Research/namd/ NAMD] || 2.12-Git-2017-12-18-iomkl-2017b-mpi ||  
 +
{|
 
|-
 
|-
| [http://xianyi.github.com/OpenBLAS/ OpenBLAS] || 0.2.20-GCC-7.2.0-2.29 || GCC/7.2.0-2.29 || OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
+
|FFTW/3.3.6-iomkl-2017b
 
|-
 
|-
| [http://www.open-mpi.org/ OpenMPI] || 2.1.1-GCC-6.4.0-2.28 ||
+
|Tcl/8.6.7-GCCcore-6.4.0
{|
 
 
|-
 
|-
|GCC/6.4.0-2.28
+
|iomkl/2017b
 +
|}
 +
|| NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.
 
|-
 
|-
|hwloc/1.11.7-GCCcore-6.4.0
+
| [http://www.nasm.us/ NASM] || 2.13.01-GCCcore-7.2.0 || GCCcore/7.2.0 || NASM: General-purpose x86 assembler
|}
 
|| The Open MPI Project is an open source MPI-2 implementation.
 
 
|-
 
|-
| [http://www.open-mpi.org/ OpenMPI] || 2.1.1-GCC-7.2.0-2.29 ||  
+
| [http://ncbi.github.io/cxx-toolkit/ NCBI-Toolkit] || 18.0.0-iomkl-2017a ||  
 
{|
 
{|
 
|-
 
|-
|GCC/7.2.0-2.29
+
|Boost/1.58.0-iomkl-2017a
 +
|-
 +
|DB/6.2.32-iomkl-2017a
 +
|-
 +
|HTSlib/1.4.1-iomkl-2017a
 
|-
 
|-
|hwloc/1.11.7-GCCcore-7.2.0
+
|Python/2.7.13-iomkl-2017a
|}
 
|| The Open MPI Project is an open source MPI-2 implementation.
 
 
|-
 
|-
| [http://www.open-mpi.org/ OpenMPI] || 2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28 ||
+
|SAMtools/1.4.1-iomkl-2017a
{|
 
 
|-
 
|-
|hwloc/1.11.7-GCCcore-6.4.0
+
|iomkl/2017a
 
|-
 
|-
|iccifort/2017.4.196-GCC-6.4.0-2.28
+
|libxslt/1.1.29-iomkl-2017a
 
|}
 
|}
  || The Open MPI Project is an open source MPI-2 implementation.
+
  || The NCBI Toolkit is a collection of utilities developed for the  production and distribution of GenBank, Entrez, BLAST, and related services  by the National Center for Biotechnology Information.
 +
|-
 +
| [http://ab-initio.mit.edu/wiki/index.php/NLopt NLopt] || 2.4.2-foss-2017beocatb || foss/2017beocatb || NLopt is a free/open-source library for nonlinear optimization,  providing a common interface for a number of different free optimization routines  available online as well as original implementations of various other algorithms.
 
|-
 
|-
| [http://www.open-mpi.org/ OpenMPI] || 2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29 ||  
+
| [http://www.gnu.org/software/octave/ Octave] || 4.2.1-foss-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|hwloc/1.11.7-GCCcore-7.2.0
+
|FFTW/3.3.6-gompi-2017beocatb
 
|-
 
|-
|iccifort/2018.0.128-GCC-7.2.0-2.29
+
|FLTK/1.3.4-foss-2017beocatb
|}
 
|| The Open MPI Project is an open source MPI-2 implementation.
 
 
|-
 
|-
| [http://www.pcre.org/ PCRE] || 8.41-GCCcore-7.2.0 ||
+
|GL2PS/1.4.0-foss-2017beocatb
{|
 
 
|-
 
|-
|GCCcore/7.2.0
+
|GLPK/4.61-foss-2017beocatb
 
|-
 
|-
|bzip2/1.0.6-GCCcore-7.2.0
+
|GraphicsMagick/1.3.25-foss-2017beocatb
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|HDF5/1.8.19-foss-2017beocatb
|}
 
|| The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl
 
 
|-
 
|-
| [http://trac.osgeo.org/proj/ PROJ] || 4.9.3-foss-2017beocatb || foss/2017beocatb || Program proj is a standard Unix filter function which conver
+
|Java/1.8.0_144
 
|-
 
|-
| [http://www.pango.org/ Pango] || 1.40.5-foss-2017beocatb ||
+
|Mesa/17.0.2-foss-2017beocatb
{|
 
 
|-
 
|-
|GLib/2.53.5-GCCcore-7.2.0
+
|PCRE/8.41-GCCcore-7.2.0
 
|-
 
|-
|HarfBuzz/1.3.1-foss-2017beocatb
+
|Qhull/2015.2-foss-2017beocatb
 
|-
 
|-
|X11/20170314-GCCcore-7.2.0
+
|Qt5/5.8.0-foss-2017beocatb
 
|-
 
|-
|cairo/1.14.8-foss-2017beocatb
+
|SuiteSparse/4.5.5-foss-2017beocatb-METIS-5.1.0
 +
|-
 +
|X11/20170314-GCCcore-7.2.0
 +
|-
 +
|arpack-ng/3.5.0-foss-2017beocatb
 
|-
 
|-
|foss/2017beocatb
+
|cURL/7.55.1-GCCcore-7.2.0
|}
 
|| Pango is a library for laying out and rendering of text, with an emphasis on internationalizati
 
 
|-
 
|-
| [http://www.paraview.org ParaView] || 5.3.0-foss-2017beocatb-mpi ||
+
|fontconfig/2.12.4-GCCcore-7.2.0
{|
 
 
|-
 
|-
|HDF5/1.8.19-foss-2017beocatb
+
|foss/2017beocatb
 
|-
 
|-
|Mesa/17.0.2-foss-2017beocatb
+
|freetype/2.8-GCCcore-7.2.0
 
|-
 
|-
|Python/2.7.13-foss-2017beocatb
+
|gnuplot/5.0.6-foss-2017beocatb
 
|-
 
|-
|Qt5/5.8.0-foss-2017beocatb
+
|libGLU/9.0.0-foss-2017beocatb
 
|-
 
|-
|X11/20170314-GCCcore-7.2.0
+
|libreadline/7.0-GCCcore-7.2.0
 
|-
 
|-
|foss/2017beocatb
+
|ncurses/6.0-GCCcore-7.2.0
 
|-
 
|-
|libGLU/9.0.0-foss-2017beocatb
+
|qrupdate/1.1.2-foss-2017beocatb
 
|-
 
|-
 
|zlib/1.2.11-GCCcore-7.2.0
 
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || ParaView is a scientific parallel visualizer.
+
  || GNU Octave is a high-level interpreted language, primarily intended for numerical computations.
 +
|-
 +
| [http://xianyi.github.com/OpenBLAS/ OpenBLAS] || 0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0 || GCC/6.3.0-2.27 || OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
 
|-
 
|-
| [https://www.perl.org/ Perl] || 5.26.0-foss-2017beocatb || foss/2017beocatb || Larry Wall's Practical Extraction and Report Language
+
| [http://xianyi.github.com/OpenBLAS/ OpenBLAS] || 0.2.20-GCC-6.4.0-2.28 || GCC/6.4.0-2.28 || OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
 
|-
 
|-
| [https://www.perl.org/ Perl] || 5.26.0-iompi-2017beocatb || iompi/2017beocatb || Larry Wall's Practical Extraction and Report Language
+
| [http://xianyi.github.com/OpenBLAS/ OpenBLAS] || 0.2.20-GCC-7.2.0-2.29 || GCC/7.2.0-2.29 || OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
 
|-
 
|-
| [http://python.org/ Python] || 2.7.13-GCCcore-7.2.0-bare ||  
+
| [http://www.open-mpi.org/ OpenMPI] || 2.0.2-GCC-6.3.0-2.27 ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/7.2.0
+
|GCC/6.3.0-2.27
 
|-
 
|-
|SQLite/3.20.1-GCCcore-7.2.0
+
|hwloc/1.11.5-GCC-6.3.0-2.27
 +
|}
 +
|| The Open MPI Project is an open source MPI-2 implementation.
 
|-
 
|-
|bzip2/1.0.6-GCCcore-7.2.0
+
| [http://www.open-mpi.org/ OpenMPI] || 2.0.2-iccifort-2017.1.132-GCC-6.3.0-2.27 ||
 +
{|
 
|-
 
|-
|libreadline/7.0-GCCcore-7.2.0
+
|hwloc/1.11.5-iccifort-2017.1.132-GCC-6.3.0-2.27
 
|-
 
|-
|ncurses/6.0-GCCcore-7.2.0
+
|iccifort/2017.1.132-GCC-6.3.0-2.27
|-
 
|zlib/1.2.11-GCCcore-7.2.0
 
 
|}
 
|}
  || Python is a programming language that lets you work more quickly and integrate your systems more effective
+
  || The Open MPI Project is an open source MPI-2 implementation.
 
|-
 
|-
| [http://python.org/ Python] || 2.7.13-foss-2017beocatb ||  
+
| [http://www.open-mpi.org/ OpenMPI] || 2.1.1-GCC-6.4.0-2.28 ||  
 
{|
 
{|
 
|-
 
|-
|GMP/6.1.2-GCCcore-7.2.0
+
|GCC/6.4.0-2.28
 
|-
 
|-
|SQLite/3.20.1-GCCcore-7.2.0
+
|hwloc/1.11.7-GCCcore-6.4.0
 +
|}
 +
|| The Open MPI Project is an open source MPI-2 implementation.
 
|-
 
|-
|bzip2/1.0.6-GCCcore-7.2.0
+
| [http://www.open-mpi.org/ OpenMPI] || 2.1.1-GCC-7.2.0-2.29 ||
 +
{|
 
|-
 
|-
|foss/2017beocatb
+
|GCC/7.2.0-2.29
 
|-
 
|-
|libffi/3.2.1-GCCcore-7.2.0
+
|hwloc/1.11.7-GCCcore-7.2.0
 +
|}
 +
|| The Open MPI Project is an open source MPI-2 implementation.
 
|-
 
|-
|libreadline/7.0-GCCcore-7.2.0
+
| [http://www.open-mpi.org/ OpenMPI] || 2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28 ||
 +
{|
 
|-
 
|-
|ncurses/6.0-GCCcore-7.2.0
+
|hwloc/1.11.7-GCCcore-6.4.0
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|iccifort/2017.4.196-GCC-6.4.0-2.28
 
|}
 
|}
  || Python is a programming language that lets you work more quickly and integrate your systems more effectively.
+
  || The Open MPI Project is an open source MPI-2 implementation.
 
|-
 
|-
| [http://python.org/ Python] || 2.7.13-iomkl-2017beocatb ||  
+
| [http://www.open-mpi.org/ OpenMPI] || 2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29 ||  
 
{|
 
{|
 
|-
 
|-
|GMP/6.1.2-GCCcore-7.2.0
+
|hwloc/1.11.7-GCCcore-7.2.0
 
|-
 
|-
|SQLite/3.20.1-GCCcore-7.2.0
+
|iccifort/2018.0.128-GCC-7.2.0-2.29
 +
|}
 +
|| The Open MPI Project is an open source MPI-2 implementation.
 
|-
 
|-
|bzip2/1.0.6-GCCcore-7.2.0
+
| [http://www.pcre.org/ PCRE] || 8.41-GCCcore-7.2.0 ||
 +
{|
 
|-
 
|-
|iomkl/2017beocatb
+
|GCCcore/7.2.0
 
|-
 
|-
|libffi/3.2.1-GCCcore-7.2.0
+
|bzip2/1.0.6-GCCcore-7.2.0
|-
 
|libreadline/7.0-GCCcore-7.2.0
 
|-
 
|ncurses/6.0-GCCcore-7.2.0
 
 
|-
 
|-
 
|zlib/1.2.11-GCCcore-7.2.0
 
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || Python is a programming language that lets you work more quickly and integrate your systems more effectively.
+
  || The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl
 
|-
 
|-
| [http://www.qhull.org Qhull] || 2015.2-foss-2017beocatb || foss/2017beocatb ||  
+
| [http://trac.osgeo.org/proj/ PROJ] || 4.9.3-foss-2017beocatb || foss/2017beocatb || Program proj is a standard Unix filter function which conver
 
|-
 
|-
| [http://qt.io/ Qt] || 4.8.7-foss-2017beocatb ||  
+
| [http://www.pango.org/ Pango] || 1.40.5-foss-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
 
|GLib/2.53.5-GCCcore-7.2.0
 
|GLib/2.53.5-GCCcore-7.2.0
 +
|-
 +
|HarfBuzz/1.3.1-foss-2017beocatb
 
|-
 
|-
 
|X11/20170314-GCCcore-7.2.0
 
|X11/20170314-GCCcore-7.2.0
 +
|-
 +
|cairo/1.14.8-foss-2017beocatb
 
|-
 
|-
 
|foss/2017beocatb
 
|foss/2017beocatb
 +
|}
 +
|| Pango is a library for laying out and rendering of text, with an emphasis on internationalizati
 
|-
 
|-
|libGLU/9.0.0-foss-2017beocatb
+
| [http://www.paraview.org ParaView] || 5.3.0-foss-2017beocatb-mpi ||
 +
{|
 
|-
 
|-
|libpng/1.6.32-GCCcore-7.2.0
+
|HDF5/1.8.19-foss-2017beocatb
|}
+
|-
|| Qt is a comprehensive cross-platform C++ application framework.
+
|Mesa/17.0.2-foss-2017beocatb
 
|-
 
|-
| [http://qt.io/ Qt5] || 5.8.0-foss-2017beocatb ||
+
|Python/2.7.13-foss-2017beocatb
{|
 
 
|-
 
|-
|GLib/2.53.5-GCCcore-7.2.0
+
|Qt5/5.8.0-foss-2017beocatb
 
|-
 
|-
 
|X11/20170314-GCCcore-7.2.0
 
|X11/20170314-GCCcore-7.2.0
Line 729: Line 844:
 
|libGLU/9.0.0-foss-2017beocatb
 
|libGLU/9.0.0-foss-2017beocatb
 
|-
 
|-
|libpng/1.6.32-GCCcore-7.2.0
+
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || Qt is a comprehensive cross-platform C++ application framework.
+
  || ParaView is a scientific parallel visualizer.
 
|-
 
|-
| [http://www.r-project.org/ R] || 3.4.0-foss-2017beocatb-X11-20170314 ||  
+
| [http://www.paraview.org ParaView] || 5.3.0-iomkl-2017beocatb-mpi ||  
 
{|
 
{|
 
|-
 
|-
|FFTW/3.3.6-gompi-2017beocatb
+
|HDF5/1.8.19-iomkl-2017beocatb
 
|-
 
|-
|GDAL/2.2.0-foss-2017beocatb-Python-2.7.13
+
|Mesa/17.0.2-iomkl-2017beocatb
 
|-
 
|-
|GMP/6.1.2-GCCcore-7.2.0
+
|Python/2.7.13-iomkl-2017beocatb
 
|-
 
|-
|Java/1.8.0_144
+
|Qt5/5.8.0-iomkl-2017beocatb
 
|-
 
|-
|LibTIFF/4.0.8-GCCcore-7.2.0
+
|X11/20170314-GCCcore-7.2.0
 
|-
 
|-
|Mesa/17.0.2-foss-2017beocatb
+
|iomkl/2017beocatb
 
|-
 
|-
|NLopt/2.4.2-foss-2017beocatb
+
|libGLU/9.0.0-iomkl-2017beocatb
 
|-
 
|-
|PCRE/8.41-GCCcore-7.2.0
+
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
|| ParaView is a scientific parallel visualizer.
 
|-
 
|-
|PROJ/4.9.3-foss-2017beocatb
+
| [https://www.perl.org/ Perl] || 5.26.0-foss-2017beocatb || foss/2017beocatb || Larry Wall's Practical Extraction and Report Language
 
|-
 
|-
|SQLite/3.20.1-GCCcore-7.2.0
+
| [https://www.perl.org/ Perl] || 5.26.0-iompi-2017beocatb || iompi/2017beocatb || Larry Wall's Practical Extraction and Report Language
 
|-
 
|-
|Tcl/8.6.7-GCCcore-7.2.0
+
| [http://python.org/ Python] || 2.7.13-GCCcore-7.2.0-bare ||
 +
{|
 
|-
 
|-
|Tk/8.6.7-foss-2017beocatb
+
|GCCcore/7.2.0
 
|-
 
|-
|X11/20170314-GCCcore-7.2.0
+
|SQLite/3.20.1-GCCcore-7.2.0
|-
 
|XZ/5.2.3-GCCcore-7.2.0
 
 
|-
 
|-
 
|bzip2/1.0.6-GCCcore-7.2.0
 
|bzip2/1.0.6-GCCcore-7.2.0
 
|-
 
|-
|cURL/7.55.1-GCCcore-7.2.0
+
|libreadline/7.0-GCCcore-7.2.0
 
|-
 
|-
|cairo/1.14.8-foss-2017beocatb
+
|ncurses/6.0-GCCcore-7.2.0
 
|-
 
|-
|foss/2017beocatb
+
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
|| Python is a programming language that lets you work more quickly and integrate your systems more effective
 
|-
 
|-
|libGLU/9.0.0-foss-2017beocatb
+
| [http://python.org/ Python] || 2.7.13-foss-2017beocatb ||
 +
{|
 
|-
 
|-
|libjpeg-turbo/1.5.2-GCCcore-7.2.0
+
|GMP/6.1.2-GCCcore-7.2.0
 
|-
 
|-
|libpng/1.6.32-GCCcore-7.2.0
+
|SQLite/3.20.1-GCCcore-7.2.0
 +
|-
 +
|bzip2/1.0.6-GCCcore-7.2.0
 
|-
 
|-
|libreadline/7.0-GCCcore-7.2.0
+
|foss/2017beocatb
 
|-
 
|-
|libsndfile/1.0.28-foss-2017beocatb
+
|libffi/3.2.1-GCCcore-7.2.0
 
|-
 
|-
|libxml2/2.9.4-GCCcore-7.2.0
+
|libreadline/7.0-GCCcore-7.2.0
 
|-
 
|-
 
|ncurses/6.0-GCCcore-7.2.0
 
|ncurses/6.0-GCCcore-7.2.0
Line 788: Line 909:
 
|zlib/1.2.11-GCCcore-7.2.0
 
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || R is a free software environment for statistical computing and graphics.
+
  || Python is a programming language that lets you work more quickly and integrate your systems more effectively.
 
|-
 
|-
| [http://www.htslib.org/ SAMtools] || 0.1.17-foss-2017beocatb ||  
+
| [http://python.org/ Python] || 2.7.13-iomkl-2017a ||  
 
{|
 
{|
 
|-
 
|-
|foss/2017beocatb
+
|GMP/6.1.2-GCCcore-6.3.0
 
|-
 
|-
|ncurses/6.0-GCCcore-7.2.0
+
|SQLite/3.17.0-GCCcore-6.3.0
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|bzip2/1.0.6-GCCcore-6.3.0
|}
 
|| SAM Tools provide various utilities for manipulating alignments in the SAM format,  including sorting, merging, indexing and generating alignments in a per-position format.
 
 
|-
 
|-
| [http://www.htslib.org/ SAMtools] || 1.6-foss-2017beocatb ||
+
|iomkl/2017a
{|
 
 
|-
 
|-
|XZ/5.2.3-GCCcore-7.2.0
+
|libffi/3.2.1-GCCcore-6.3.0
 
|-
 
|-
|bzip2/1.0.6-GCCcore-7.2.0
+
|libreadline/7.0-GCCcore-6.3.0
 
|-
 
|-
|foss/2017beocatb
+
|ncurses/6.0-GCCcore-6.3.0
 
|-
 
|-
|ncurses/6.0-GCCcore-7.2.0
+
|zlib/1.2.11-GCCcore-6.3.0
 +
|}
 +
|| Python is a programming language that lets you work more quickly and integrate your systems more effectively.
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
| [http://python.org/ Python] || 2.7.13-iomkl-2017beocatb ||  
|}
 
|| SAM Tools provide various utilities for manipulating alignments in the SAM format,  including sorting, merging, indexing and generating alignments in a per-position format.
 
|-
 
| [http://gforge.inria.fr/projects/scotch/ SCOTCH] || 6.0.4-foss-2017beocatb ||  
 
 
{|
 
{|
 
|-
 
|-
|foss/2017beocatb
+
|GMP/6.1.2-GCCcore-7.2.0
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|SQLite/3.20.1-GCCcore-7.2.0
|}
 
|| Software package and libraries for sequential and parallel graph partitioni
 
 
|-
 
|-
| [http://gforge.inria.fr/projects/scotch/ SCOTCH] || 6.0.4-iomkl-2017beocatb ||
+
|bzip2/1.0.6-GCCcore-7.2.0
{|
 
 
|-
 
|-
 
|iomkl/2017beocatb
 
|iomkl/2017beocatb
 +
|-
 +
|libffi/3.2.1-GCCcore-7.2.0
 +
|-
 +
|libreadline/7.0-GCCcore-7.2.0
 +
|-
 +
|ncurses/6.0-GCCcore-7.2.0
 
|-
 
|-
 
|zlib/1.2.11-GCCcore-7.2.0
 
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || Software package and libraries for sequential and parallel graph partitioni
+
  || Python is a programming language that lets you work more quickly and integrate your systems more effectively.
 
|-
 
|-
| [http://www.sqlite.org/ SQLite] || 3.20.1-GCCcore-7.2.0 ||  
+
| [http://python.org/ Python] || 3.6.3-foss-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/7.2.0
+
|GMP/6.1.2-GCCcore-7.2.0
 
|-
 
|-
|Tcl/8.6.7-GCCcore-7.2.0
+
|SQLite/3.20.1-GCCcore-7.2.0
 
|-
 
|-
|libreadline/7.0-GCCcore-7.2.0
+
|XZ/5.2.3-GCCcore-7.2.0
|}
 
|| SQLite: SQL Database Engine in a C Library
 
 
|-
 
|-
| [http://www.swig.org/ SWIG] || 3.0.12-foss-2017beocatb-Python-2.7.13 ||
+
|bzip2/1.0.6-GCCcore-7.2.0
{|
 
 
|-
 
|-
|PCRE/8.41-GCCcore-7.2.0
+
|foss/2017beocatb
 
|-
 
|-
|Python/2.7.13-foss-2017beocatb
+
|libffi/3.2.1-GCCcore-7.2.0
 
|-
 
|-
|foss/2017beocatb
+
|libreadline/7.0-GCCcore-7.2.0
|}
 
|| SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
 
 
|-
 
|-
| [http://www.netlib.org/scalapack/ ScaLAPACK] || 2.0.2-gompi-2017b-OpenBLAS-0.2.20 ||
+
|ncurses/6.0-GCCcore-7.2.0
{|
 
 
|-
 
|-
|OpenBLAS/0.2.20-GCC-6.4.0-2.28
+
|zlib/1.2.11-GCCcore-7.2.0
|-
 
|gompi/2017b
 
 
|}
 
|}
  || The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
+
  || Python is a programming language that lets you work more quickly and integrate your systems more effectively.
 
|-
 
|-
| [http://www.netlib.org/scalapack/ ScaLAPACK] || 2.0.2-gompi-2017beocatb-OpenBLAS-0.2.20 ||  
+
| [http://python.org/ Python] || 3.6.3-iomkl-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|OpenBLAS/0.2.20-GCC-7.2.0-2.29
+
|GMP/6.1.2-GCCcore-7.2.0
 
|-
 
|-
|gompi/2017beocatb
+
|SQLite/3.20.1-GCCcore-7.2.0
|}
 
|| The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
 
 
|-
 
|-
| [http://faculty.cse.tamu.edu/davis/suitesparse.html SuiteSparse] || 4.5.5-foss-2017beocatb-METIS-5.1.0 ||
+
|XZ/5.2.3-GCCcore-7.2.0
{|
 
 
|-
 
|-
|METIS/5.1.0-foss-2017beocatb
+
|bzip2/1.0.6-GCCcore-7.2.0
 
|-
 
|-
|foss/2017beocatb
+
|iomkl/2017beocatb
|}
 
|| SuiteSparse is a collection of libraries manipulate sparse matrices.
 
 
|-
 
|-
| [http://www.hdfgroup.org/doc_resource/SZIP/ Szip] || 2.1.1-GCCcore-7.2.0 || GCCcore/7.2.0 || Szip compression software, providing lossless compression of scientific d
+
|libffi/3.2.1-GCCcore-7.2.0
 
|-
 
|-
| [http://www.tcl.tk/ Tcl] || 8.6.7-GCCcore-7.2.0 ||
+
|libreadline/7.0-GCCcore-7.2.0
{|
 
 
|-
 
|-
|GCCcore/7.2.0
+
|ncurses/6.0-GCCcore-7.2.0
 
|-
 
|-
 
|zlib/1.2.11-GCCcore-7.2.0
 
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many mo
+
  || Python is a programming language that lets you work more quickly and integrate your systems more effectively.
 +
|-
 +
| [http://www.qhull.org Qhull] || 2015.2-foss-2017beocatb || foss/2017beocatb ||
 
|-
 
|-
| [http://www.tcl.tk/ Tk] || 8.6.7-foss-2017beocatb ||  
+
| [http://qt.io/ Qt] || 4.8.7-foss-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|Tcl/8.6.7-GCCcore-7.2.0
+
|GLib/2.53.5-GCCcore-7.2.0
 
|-
 
|-
 
|X11/20170314-GCCcore-7.2.0
 
|X11/20170314-GCCcore-7.2.0
Line 903: Line 1,010:
 
|foss/2017beocatb
 
|foss/2017beocatb
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|libGLU/9.0.0-foss-2017beocatb
 +
|-
 +
|libpng/1.6.32-GCCcore-7.2.0
 
|}
 
|}
  || Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
+
  || Qt is a comprehensive cross-platform C++ application framework.
|-
 
| [http://www.vasp.at VASP] || 5.4.1-foss-2017beocatb || foss/2017beocatb || The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic sc
 
|-
 
| [http://www.vasp.at VASP] || 5.4.4-iomkl-2017beocatb || iomkl/2017beocatb || The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic sc
 
 
|-
 
|-
| [https://www.x.org X11] || 20170314-GCCcore-7.2.0 ||  
+
| [http://qt.io/ Qt] || 4.8.7-iomkl-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/7.2.0
+
|GLib/2.53.5-GCCcore-7.2.0
 
|-
 
|-
|bzip2/1.0.6-GCCcore-7.2.0
+
|X11/20170314-GCCcore-7.2.0
 
|-
 
|-
|fontconfig/2.12.4-GCCcore-7.2.0
+
|iomkl/2017beocatb
 
|-
 
|-
|freetype/2.8-GCCcore-7.2.0
+
|libGLU/9.0.0-iomkl-2017beocatb
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|libpng/1.6.32-GCCcore-7.2.0
 
|}
 
|}
  || The X Window System (X11) is a windowing system for bitmap displays
+
  || Qt is a comprehensive cross-platform C++ application framework.
 
|-
 
|-
| [http://tukaani.org/xz/ XZ] || 5.2.3-GCCcore-7.2.0 || GCCcore/7.2.0 || xz: XZ utilities
+
| [http://qt.io/ Qt5] || 5.8.0-foss-2017beocatb ||  
 +
{|
 
|-
 
|-
| [http://forge.scilab.org/index.php/p/arpack-ng/ arpack-ng] || 3.5.0-foss-2017beocatb || foss/2017beocatb || ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
+
|GLib/2.53.5-GCCcore-7.2.0
 
|-
 
|-
| [http://directory.fsf.org/project/binutils/ binutils] || 2.28-GCCcore-6.4.0 || GCCcore/6.4.0 || binutils: GNU binary utilities
+
|X11/20170314-GCCcore-7.2.0
 
|-
 
|-
| [http://directory.fsf.org/project/binutils/ binutils] || 2.28 ||  || binutils: GNU binary utilities
+
|foss/2017beocatb
 
|-
 
|-
| [http://directory.fsf.org/project/binutils/ binutils] || 2.29-GCCcore-7.2.0 || GCCcore/7.2.0 || binutils: GNU binary utilities
+
|libGLU/9.0.0-foss-2017beocatb
 
|-
 
|-
| [http://directory.fsf.org/project/binutils/ binutils] || 2.29 ||  || binutils: GNU binary utilities
+
|libpng/1.6.32-GCCcore-7.2.0
|-
 
| [http://www.bzip.org/ bzip2] || 1.0.6-GCCcore-7.2.0 || GCCcore/7.2.0 || bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
 
|-
 
| [http://curl.haxx.se cURL] || 7.55.1-GCCcore-7.2.0 ||
 
{|
 
|-
 
|GCCcore/7.2.0
 
|-
 
|zlib/1.2.11-GCCcore-7.2.0
 
 
|}
 
|}
  || libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and mo
+
  || Qt is a comprehensive cross-platform C++ application framework.
 
|-
 
|-
| [http://cairographics.org cairo] || 1.14.8-foss-2017beocatb ||  
+
| [http://qt.io/ Qt5] || 5.8.0-iomkl-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
Line 956: Line 1,053:
 
|X11/20170314-GCCcore-7.2.0
 
|X11/20170314-GCCcore-7.2.0
 
|-
 
|-
|bzip2/1.0.6-GCCcore-7.2.0
+
|iomkl/2017beocatb
 
|-
 
|-
|expat/2.2.4-GCCcore-7.2.0
+
|libGLU/9.0.0-iomkl-2017beocatb
 
|-
 
|-
|foss/2017beocatb
+
|libpng/1.6.32-GCCcore-7.2.0
 +
|}
 +
|| Qt is a comprehensive cross-platform C++ application framework.
 
|-
 
|-
|freetype/2.8-GCCcore-7.2.0
+
| [http://www.r-project.org/ R] || 3.4.0-foss-2017beocatb-X11-20170314 ||
 +
{|
 
|-
 
|-
|libpng/1.6.32-GCCcore-7.2.0
+
|FFTW/3.3.6-gompi-2017beocatb
 
|-
 
|-
|pixman/0.34.0-GCCcore-7.2.0
+
|GDAL/2.2.0-foss-2017beocatb-Python-2.7.13
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|GMP/6.1.2-GCCcore-7.2.0
|}
 
|| Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
 
 
|-
 
|-
| [http://expat.sourceforge.net/ expat] || 2.2.4-GCCcore-7.2.0 || GCCcore/7.2.0 || Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start ta
+
|Java/1.8.0_144
 
|-
 
|-
| [http://flex.sourceforge.net/ flex] || 2.6.3 || M4/1.4.18 || Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner,  sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
+
|LibTIFF/4.0.8-GCCcore-7.2.0
 
|-
 
|-
| [http://flex.sourceforge.net/ flex] || 2.6.4-GCCcore-6.4.0 ||
+
|Mesa/17.0.2-foss-2017beocatb
{|
 
 
|-
 
|-
|GCCcore/6.4.0
+
|NLopt/2.4.2-foss-2017beocatb
 
|-
 
|-
|M4/1.4.18-GCCcore-6.4.0
+
|PCRE/8.41-GCCcore-7.2.0
|}
 
|| Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner,  sometimes called a tokenizer, is a program which recognizes lexical patterns in te
 
 
|-
 
|-
| [http://flex.sourceforge.net/ flex] || 2.6.4-GCCcore-7.2.0 ||
+
|PROJ/4.9.3-foss-2017beocatb
{|
 
 
|-
 
|-
|GCCcore/7.2.0
+
|SQLite/3.20.1-GCCcore-7.2.0
 
|-
 
|-
|M4/1.4.18-GCCcore-7.2.0
+
|Tcl/8.6.7-GCCcore-7.2.0
|}
 
|| Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner,  sometimes called a tokenizer, is a program which recognizes lexical patterns in te
 
 
|-
 
|-
| [http://flex.sourceforge.net/ flex] || 2.6.4 || M4/1.4.18 || Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in te
+
|Tk/8.6.7-foss-2017beocatb
 
|-
 
|-
| [http://www.freedesktop.org/software/fontconfig fontconfig] || 2.12.4-GCCcore-7.2.0 ||
+
|X11/20170314-GCCcore-7.2.0
{|
 
 
|-
 
|-
|GCCcore/7.2.0
+
|XZ/5.2.3-GCCcore-7.2.0
 
|-
 
|-
|expat/2.2.4-GCCcore-7.2.0
+
|bzip2/1.0.6-GCCcore-7.2.0
 
|-
 
|-
|freetype/2.8-GCCcore-7.2.0
+
|cURL/7.55.1-GCCcore-7.2.0
|}
 
|| Fontconfig is a library designed to provide system-wide font configuration, customization and application acce
 
 
|-
 
|-
| foss || 2017b ||
+
|cairo/1.14.8-foss-2017beocatb
{|
 
 
|-
 
|-
|FFTW/3.3.6-gompi-2017b
+
|foss/2017beocatb
 
|-
 
|-
|GCC/6.4.0-2.28
+
|libGLU/9.0.0-foss-2017beocatb
 
|-
 
|-
|OpenBLAS/0.2.20-GCC-6.4.0-2.28
+
|libjpeg-turbo/1.5.2-GCCcore-7.2.0
 
|-
 
|-
|OpenMPI/2.1.1-GCC-6.4.0-2.28
+
|libpng/1.6.32-GCCcore-7.2.0
 
|-
 
|-
|ScaLAPACK/2.0.2-gompi-2017b-OpenBLAS-0.2.20
+
|libreadline/7.0-GCCcore-7.2.0
|}
 
|| GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
 
 
|-
 
|-
| foss || 2017beocatb ||
+
|libsndfile/1.0.28-foss-2017beocatb
{|
 
 
|-
 
|-
|FFTW/3.3.6-gompi-2017beocatb
+
|libxml2/2.9.4-GCCcore-7.2.0
 
|-
 
|-
|GCC/7.2.0-2.29
+
|ncurses/6.0-GCCcore-7.2.0
 
|-
 
|-
|OpenBLAS/0.2.20-GCC-7.2.0-2.29
+
|zlib/1.2.11-GCCcore-7.2.0
|-
 
|OpenMPI/2.1.1-GCC-7.2.0-2.29
 
|-
 
|ScaLAPACK/2.0.2-gompi-2017beocatb-OpenBLAS-0.2.20
 
 
|}
 
|}
  || GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
+
  || R is a free software environment for statistical computing and graphics.
 
|-
 
|-
| [http://freeglut.sourceforge.net/ freeglut] || 3.0.0-foss-2017beocatb ||  
+
| [http://www.htslib.org/ SAMtools] || 0.1.17-foss-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|Mesa/17.0.2-foss-2017beocatb
+
|foss/2017beocatb
 
|-
 
|-
|X11/20170314-GCCcore-7.2.0
+
|ncurses/6.0-GCCcore-7.2.0
 
|-
 
|-
|foss/2017beocatb
+
|zlib/1.2.11-GCCcore-7.2.0
|-
 
|libGLU/9.0.0-foss-2017beocatb
 
 
|}
 
|}
  || freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.
+
  || SAM Tools provide various utilities for manipulating alignments in the SAM format,  including sorting, merging, indexing and generating alignments in a per-position format.
 
|-
 
|-
| [http://freetype.org freetype] || 2.8-GCCcore-7.2.0 ||  
+
| [http://www.htslib.org/ SAMtools] || 1.4.1-iomkl-2017a ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/7.2.0
+
|XZ/5.2.3-GCCcore-6.3.0
 +
|-
 +
|bzip2/1.0.6-GCCcore-6.3.0
 
|-
 
|-
|bzip2/1.0.6-GCCcore-7.2.0
+
|iomkl/2017a
 
|-
 
|-
|libpng/1.6.32-GCCcore-7.2.0
+
|ncurses/6.0-GCCcore-6.3.0
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|zlib/1.2.11-GCCcore-6.3.0
 
|}
 
|}
  || FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as we
+
  || SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
 
|-
 
|-
| [http://www.gnu.org/software/gettext/ gettext] || 0.19.8.1-GCCcore-7.2.0 ||  
+
| [http://www.htslib.org/ SAMtools] || 1.6-foss-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/7.2.0
+
|XZ/5.2.3-GCCcore-7.2.0
 +
|-
 +
|bzip2/1.0.6-GCCcore-7.2.0
 
|-
 
|-
|libxml2/2.9.4-GCCcore-7.2.0
+
|foss/2017beocatb
 
|-
 
|-
 
|ncurses/6.0-GCCcore-7.2.0
 
|ncurses/6.0-GCCcore-7.2.0
 +
|-
 +
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we
+
  || SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
 
|-
 
|-
| [http://www.gnu.org/software/gettext/ gettext] || 0.19.8.1 || ncurses/6.0 || GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we
+
| [http://gforge.inria.fr/projects/scotch/ SCOTCH] || 6.0.4-foss-2017beocatb ||  
|-
 
| gmvapich2 || 2017beocatb ||  
 
 
{|
 
{|
 
|-
 
|-
|GCC/7.2.0-2.29
+
|foss/2017beocatb
 
|-
 
|-
|MVAPICH2/2.3b-GCC-7.2.0-2.29
+
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || GNU Compiler Collection (GCC) based compiler toolchain, including MVAPICH2 for MPI support.
+
  || Software package and libraries for sequential and parallel graph partitioni
 
|-
 
|-
| [http://gnuplot.sourceforge.net/ gnuplot] || 5.0.6-foss-2017beocatb ||  
+
| [http://gforge.inria.fr/projects/scotch/ SCOTCH] || 6.0.4-iomkl-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|Pango/1.40.5-foss-2017beocatb
+
|iomkl/2017beocatb
 
|-
 
|-
|Qt5/5.8.0-foss-2017beocatb
+
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
|| Software package and libraries for sequential and parallel graph partitioni
 
|-
 
|-
|cairo/1.14.8-foss-2017beocatb
+
| [http://www.sqlite.org/ SQLite] || 3.17.0-GCCcore-6.3.0 ||
 +
{|
 
|-
 
|-
|foss/2017beocatb
+
|GCCcore/6.3.0
 
|-
 
|-
|libcerf/1.5-GCCcore-7.2.0
+
|Tcl/8.6.6-GCCcore-6.3.0
 
|-
 
|-
|libgd/2.2.4-GCCcore-7.2.0
+
|libreadline/7.0-GCCcore-6.3.0
 +
|}
 +
|| SQLite: SQL Database Engine in a C Library
 
|-
 
|-
|libjpeg-turbo/1.5.2-GCCcore-7.2.0
+
| [http://www.sqlite.org/ SQLite] || 3.20.1-GCCcore-7.2.0 ||
 +
{|
 
|-
 
|-
|libpng/1.6.32-GCCcore-7.2.0
+
|GCCcore/7.2.0
 +
|-
 +
|Tcl/8.6.7-GCCcore-7.2.0
 +
|-
 +
|libreadline/7.0-GCCcore-7.2.0
 
|}
 
|}
  || Portable interactive, function plotting utility
+
  || SQLite: SQL Database Engine in a C Library
 
|-
 
|-
| gompi || 2017b ||  
+
| [http://www.swig.org/ SWIG] || 3.0.12-foss-2017beocatb-Python-2.7.13 ||  
 
{|
 
{|
 
|-
 
|-
|GCC/6.4.0-2.28
+
|PCRE/8.41-GCCcore-7.2.0
 +
|-
 +
|Python/2.7.13-foss-2017beocatb
 
|-
 
|-
|OpenMPI/2.1.1-GCC-6.4.0-2.28
+
|foss/2017beocatb
 
|}
 
|}
  || GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
+
  || SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
 
|-
 
|-
| gompi || 2017beocatb ||  
+
| [http://www.netlib.org/scalapack/ ScaLAPACK] || 2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.7.0 ||  
 
{|
 
{|
 
|-
 
|-
|GCC/7.2.0-2.29
+
|OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0
 
|-
 
|-
|OpenMPI/2.1.1-GCC-7.2.0-2.29
+
|gompi/2017a
 
|}
 
|}
  || GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
+
  || The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
 
|-
 
|-
| [http://www.gnu.org/software/gperf/ gperf] || 3.1-GCCcore-7.2.0 || GCCcore/7.2.0 || GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison on
+
| [http://www.netlib.org/scalapack/ ScaLAPACK] || 2.0.2-gompi-2017b-OpenBLAS-0.2.20 ||  
 +
{|
 
|-
 
|-
| [https://www.gnu.org/software/help2man/ help2man] || 1.47.4-GCCcore-6.4.0 || GCCcore/6.4.0 || help2man produces simple manual pages from the '--help' and '--version' output of other comman
+
|OpenBLAS/0.2.20-GCC-6.4.0-2.28
 
|-
 
|-
| [https://www.gnu.org/software/help2man/ help2man] || 1.47.4-GCCcore-7.2.0 || GCCcore/7.2.0 || help2man produces simple manual pages from the '--help' and '--version' output of other commands.
+
|gompi/2017b
 +
|}
 +
|| The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
 
|-
 
|-
| [https://www.gnu.org/software/help2man/ help2man] || 1.47.4 ||  || help2man produces simple manual pages from the '--help' and '--version' output of other commands.
+
| [http://www.netlib.org/scalapack/ ScaLAPACK] || 2.0.2-gompi-2017beocatb-OpenBLAS-0.2.20 ||  
|-
 
| [http://www.open-mpi.org/projects/hwloc/ hwloc] || 1.11.7-GCCcore-6.4.0 ||  
 
 
{|
 
{|
 
|-
 
|-
|GCCcore/6.4.0
+
|OpenBLAS/0.2.20-GCC-7.2.0-2.29
 
|-
 
|-
|numactl/2.0.11-GCCcore-6.4.0
+
|gompi/2017beocatb
 
|}
 
|}
  || The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficient
+
  || The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
 
|-
 
|-
| [http://www.open-mpi.org/projects/hwloc/ hwloc] || 1.11.7-GCCcore-7.2.0 ||  
+
| [http://faculty.cse.tamu.edu/davis/suitesparse.html SuiteSparse] || 4.5.5-foss-2017beocatb-METIS-5.1.0 ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/7.2.0
+
|METIS/5.1.0-foss-2017beocatb
 
|-
 
|-
|numactl/2.0.11-GCCcore-7.2.0
+
|foss/2017beocatb
 
|}
 
|}
  || The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficient
+
  || SuiteSparse is a collection of libraries manipulate sparse matrices.
 +
|-
 +
| [http://www.hdfgroup.org/doc_resource/SZIP/ Szip] || 2.1.1-GCCcore-7.2.0 || GCCcore/7.2.0 || Szip compression software, providing lossless compression of scientific d
 
|-
 
|-
| [http://software.intel.com/en-us/intel-compilers/ icc] || 2017.4.196-GCC-6.4.0-2.28 ||  
+
| [http://www.tcl.tk/ Tcl] || 8.6.6-GCCcore-6.3.0 ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/6.4.0
+
|GCCcore/6.3.0
 
|-
 
|-
|binutils/2.28-GCCcore-6.4.0
+
|zlib/1.2.11-GCCcore-6.3.0
 
|}
 
|}
  || Intel C and C++ compilers
+
  || Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming langua
 
|-
 
|-
| [http://software.intel.com/en-us/intel-compilers/ icc] || 2018.0.128-GCC-7.2.0-2.29 ||  
+
| [http://www.tcl.tk/ Tcl] || 8.6.7-GCCcore-6.4.0 ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/7.2.0
+
|GCCcore/6.4.0
 
|-
 
|-
|binutils/2.29-GCCcore-7.2.0
+
|zlib/1.2.11-GCCcore-6.4.0
 
|}
 
|}
  || Intel C and C++ compilers
+
  || Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many mo
 
|-
 
|-
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iccifort] || 2017.4.196-GCC-6.4.0-2.28 ||  
+
| [http://www.tcl.tk/ Tcl] || 8.6.7-GCCcore-7.2.0 ||  
 
{|
 
{|
 
|-
 
|-
|icc/2017.4.196-GCC-6.4.0-2.28
+
|GCCcore/7.2.0
 
|-
 
|-
|ifort/2017.4.196-GCC-6.4.0-2.28
+
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || Intel C, C++ & Fortran compilers
+
  || Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many mo
 
|-
 
|-
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iccifort] || 2018.0.128-GCC-7.2.0-2.29 ||  
+
| [http://www.tcl.tk/ Tk] || 8.6.7-foss-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|icc/2018.0.128-GCC-7.2.0-2.29
+
|Tcl/8.6.7-GCCcore-7.2.0
 
|-
 
|-
|ifort/2018.0.128-GCC-7.2.0-2.29
+
|X11/20170314-GCCcore-7.2.0
|}
 
|| Intel C, C++ & Fortran compilers
 
 
|-
 
|-
| [http://software.intel.com/en-us/intel-compilers/ ifort] || 2017.4.196-GCC-6.4.0-2.28 ||
+
|foss/2017beocatb
{|
 
 
|-
 
|-
|GCCcore/6.4.0
+
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
|| Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
 
|-
 
|-
|binutils/2.28-GCCcore-6.4.0
+
| [http://www.vasp.at VASP] || 5.4.4-iomkl-2017a || iomkl/2017a || The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic sc
|}
 
|| Intel Fortran compiler
 
 
|-
 
|-
| [http://software.intel.com/en-us/intel-compilers/ ifort] || 2018.0.128-GCC-7.2.0-2.29 ||  
+
| [https://www.x.org X11] || 20170314-GCCcore-7.2.0 ||  
 
{|
 
{|
 
|-
 
|-
 
|GCCcore/7.2.0
 
|GCCcore/7.2.0
 
|-
 
|-
|binutils/2.29-GCCcore-7.2.0
+
|bzip2/1.0.6-GCCcore-7.2.0
 +
|-
 +
|fontconfig/2.12.4-GCCcore-7.2.0
 +
|-
 +
|freetype/2.8-GCCcore-7.2.0
 +
|-
 +
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || Intel Fortran compiler
+
  || The X Window System (X11) is a windowing system for bitmap displays
 
|-
 
|-
| [http://software.intel.com/en-us/intel-mkl/ imkl] || 2017.3.196-iompi-2017b || iompi/2017b || Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.
+
| [http://tukaani.org/xz/ XZ] || 5.2.3-GCCcore-6.3.0 || GCCcore/6.3.0 || xz: XZ utilities
 
|-
 
|-
| [http://software.intel.com/en-us/intel-mkl/ imkl] || 2018.0.128-iompi-2017beocatb || iompi/2017beocatb || Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.
+
| [http://tukaani.org/xz/ XZ] || 5.2.3-GCCcore-7.2.0 || GCCcore/7.2.0 || xz: XZ utilities
 
|-
 
|-
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iomkl] || 2017b ||  
+
| [http://forge.scilab.org/index.php/p/arpack-ng/ arpack-ng] || 3.5.0-foss-2017beocatb || foss/2017beocatb || ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
{|
 
 
|-
 
|-
|OpenMPI/2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28
+
| [http://directory.fsf.org/project/binutils/ binutils] || 2.27-GCCcore-6.3.0 || GCCcore/6.3.0 || binutils: GNU binary utilities
 
|-
 
|-
|icc/2017.4.196-GCC-6.4.0-2.28
+
| [http://directory.fsf.org/project/binutils/ binutils] || 2.27 ||  || binutils: GNU binary utilities
 
|-
 
|-
|ifort/2017.4.196-GCC-6.4.0-2.28
+
| [http://directory.fsf.org/project/binutils/ binutils] || 2.28-GCCcore-6.4.0 || GCCcore/6.4.0 || binutils: GNU binary utilities
 
|-
 
|-
|imkl/2017.3.196-iompi-2017b
+
| [http://directory.fsf.org/project/binutils/ binutils] || 2.28 ||  || binutils: GNU binary utilities
|}
 
  || Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.
 
 
|-
 
|-
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iomkl] || 2017beocatb ||  
+
| [http://directory.fsf.org/project/binutils/ binutils] || 2.29-GCCcore-7.2.0 || GCCcore/7.2.0 || binutils: GNU binary utilities
{|
 
 
|-
 
|-
|OpenMPI/2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29
+
| [http://directory.fsf.org/project/binutils/ binutils] || 2.29 ||  || binutils: GNU binary utilities
 
|-
 
|-
|icc/2018.0.128-GCC-7.2.0-2.29
+
| [http://www.bzip.org/ bzip2] || 1.0.6-GCCcore-6.3.0 || GCCcore/6.3.0 || bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
 
|-
 
|-
|ifort/2018.0.128-GCC-7.2.0-2.29
+
| [http://www.bzip.org/ bzip2] || 1.0.6-GCCcore-7.2.0 || GCCcore/7.2.0 || bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
 
|-
 
|-
|imkl/2018.0.128-iompi-2017beocatb
+
| [http://curl.haxx.se cURL] || 7.53.1-GCCcore-6.3.0 || GCCcore/6.3.0 || libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
|}
 
|| Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.
 
 
|-
 
|-
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iompi] || 2017b ||  
+
| [http://curl.haxx.se cURL] || 7.55.1-GCCcore-7.2.0 ||  
 
{|
 
{|
 
|-
 
|-
|OpenMPI/2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28
+
|GCCcore/7.2.0
 
|-
 
|-
|icc/2017.4.196-GCC-6.4.0-2.28
+
|zlib/1.2.11-GCCcore-7.2.0
|-
 
|ifort/2017.4.196-GCC-6.4.0-2.28
 
 
|}
 
|}
  || Intel C/C++ and Fortran compilers, alongside Open MPI.
+
  || libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and mo
 
|-
 
|-
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iompi] || 2017beocatb ||  
+
| [http://cairographics.org cairo] || 1.14.8-foss-2017beocatb ||  
 
{|
 
{|
 
|-
 
|-
|OpenMPI/2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29
+
|GLib/2.53.5-GCCcore-7.2.0
 
|-
 
|-
|icc/2018.0.128-GCC-7.2.0-2.29
+
|X11/20170314-GCCcore-7.2.0
 
|-
 
|-
|ifort/2018.0.128-GCC-7.2.0-2.29
+
|bzip2/1.0.6-GCCcore-7.2.0
|}
 
|| Intel C/C++ and Fortran compilers, alongside Open MPI.
 
 
|-
 
|-
| [http://software.intel.com/en-us/articles/intel-ipp/ ipp] || 2018.0.128 ||  || Intel Integrated Performance Primitives (Intel IPP) is an extensive library of multicore-ready, highly optimized software functions for multimedia, data processing, and communications applications. Intel IPP offers thousands of optimized functions covering frequently used fundamental algorithms.
+
|expat/2.2.4-GCCcore-7.2.0
|-
 
| [ftp://ftp.freedesktop.org/pub/mesa/glu/ libGLU] || 9.0.0-foss-2017beocatb ||
 
{|
 
|-
 
|Mesa/17.0.2-foss-2017beocatb
 
 
|-
 
|-
 
|foss/2017beocatb
 
|foss/2017beocatb
|}
 
|| The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
 
 
|-
 
|-
| [http://apps.jcns.fz-juelich.de/doku/sc/libcerf libcerf] || 1.5-GCCcore-7.2.0 || GCCcore/7.2.0 || libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functio
+
|freetype/2.8-GCCcore-7.2.0
 
|-
 
|-
| [http://dri.freedesktop.org libdrm] || 2.4.76-GCCcore-7.2.0 ||
+
|libpng/1.6.32-GCCcore-7.2.0
{|
 
 
|-
 
|-
|GCCcore/7.2.0
+
|pixman/0.34.0-GCCcore-7.2.0
 
|-
 
|-
|X11/20170314-GCCcore-7.2.0
+
|zlib/1.2.11-GCCcore-7.2.0
 
|}
 
|}
  || Direct Rendering Manager runtime library.
+
  || Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
 +
|-
 +
| [http://expat.sourceforge.net/ expat] || 2.2.4-GCCcore-7.2.0 || GCCcore/7.2.0 || Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start ta
 
|-
 
|-
| [http://sourceware.org/libffi/ libffi] || 3.2.1-GCCcore-7.2.0 || GCCcore/7.2.0 || The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-ti
+
| [http://flex.sourceforge.net/ flex] || 2.6.0 || M4/1.4.17 || Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
 
|-
 
|-
| [https://libgd.github.io/ libgd] || 2.2.4-GCCcore-7.2.0 ||  
+
| [http://flex.sourceforge.net/ flex] || 2.6.3-GCCcore-6.3.0 ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/7.2.0
+
|GCCcore/6.3.0
 +
|-
 +
|M4/1.4.18-GCCcore-6.3.0
 +
|}
 +
|| Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner,  sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
 
|-
 
|-
|fontconfig/2.12.4-GCCcore-7.2.0
+
| [http://flex.sourceforge.net/ flex] || 2.6.3 || M4/1.4.18 || Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner,  sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
 
|-
 
|-
|libjpeg-turbo/1.5.2-GCCcore-7.2.0
+
| [http://flex.sourceforge.net/ flex] || 2.6.4-GCCcore-6.4.0 ||
 +
{|
 
|-
 
|-
|libpng/1.6.32-GCCcore-7.2.0
+
|GCCcore/6.4.0
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|M4/1.4.18-GCCcore-6.4.0
 
|}
 
|}
  || GD is an open source code library for the dynamic creation of images by programmers.
+
  || Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner,  sometimes called a tokenizer, is a program which recognizes lexical patterns in te
 
|-
 
|-
| [http://sourceforge.net/projects/libjpeg-turbo/ libjpeg-turbo] || 1.5.2-GCCcore-7.2.0 ||  
+
| [http://flex.sourceforge.net/ flex] || 2.6.4-GCCcore-7.2.0 ||  
 
{|
 
{|
 
|-
 
|-
 
|GCCcore/7.2.0
 
|GCCcore/7.2.0
 
|-
 
|-
|NASM/2.13.01-GCCcore-7.2.0
+
|M4/1.4.18-GCCcore-7.2.0
 
|}
 
|}
  || libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcodi
+
  || Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner,  sometimes called a tokenizer, is a program which recognizes lexical patterns in te
 
|-
 
|-
| [http://www.libpng.org/pub/png/libpng.html libpng] || 1.6.32-GCCcore-7.2.0 ||  
+
| [http://flex.sourceforge.net/ flex] || 2.6.4 || M4/1.4.18 || Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in te
 +
|-
 +
| [http://www.freedesktop.org/software/fontconfig fontconfig] || 2.12.4-GCCcore-7.2.0 ||  
 
{|
 
{|
 
|-
 
|-
 
|GCCcore/7.2.0
 
|GCCcore/7.2.0
 
|-
 
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|expat/2.2.4-GCCcore-7.2.0
 +
|-
 +
|freetype/2.8-GCCcore-7.2.0
 
|}
 
|}
  || libpng is the official PNG reference library
+
  || Fontconfig is a library designed to provide system-wide font configuration, customization and application acce
 
|-
 
|-
| [http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html libreadline] || 7.0-GCCcore-7.2.0 ||  
+
| foss || 2017a ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/7.2.0
+
|FFTW/3.3.6-gompi-2017a
 
|-
 
|-
|ncurses/6.0-GCCcore-7.2.0
+
|GCC/6.3.0-2.27
|}
 
|| The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous comman
 
 
|-
 
|-
| [http://www.mega-nerd.com/libsndfile libsndfile] || 1.0.28-foss-2017beocatb || foss/2017beocatb || Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
+
|OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0
 
|-
 
|-
| [http://www.gnu.org/software/libtool libtool] || 2.4.6-GCCcore-7.2.0 ||
+
|OpenMPI/2.0.2-GCC-6.3.0-2.27
{|
 
 
|-
 
|-
|GCCcore/7.2.0
+
|ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.7.0
|-
 
|M4/1.4.18-GCCcore-7.2.0
 
 
|}
 
|}
  || GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interfa
+
  || GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
 
|-
 
|-
| [http://xmlsoft.org/ libxml2] || 2.9.4-GCCcore-7.2.0 ||  
+
| foss || 2017b ||  
 
{|
 
{|
 
|-
 
|-
|GCCcore/7.2.0
+
|FFTW/3.3.6-gompi-2017b
|-
+
|-
|XZ/5.2.3-GCCcore-7.2.0
+
|GCC/6.4.0-2.28
|-
+
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|OpenBLAS/0.2.20-GCC-6.4.0-2.28
|}
+
|-
  || Libxml2 is the XML C parser a
+
|OpenMPI/2.1.1-GCC-6.4.0-2.28
|-
+
|-
| [http://xmlsoft.org/ libxml2] || 2.9.4-foss-2017beocatb-Python-2.7.13 ||  
+
|ScaLAPACK/2.0.2-gompi-2017b-OpenBLAS-0.2.20
{|
+
|}
|-
+
|| GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
|Python/2.7.13-foss-2017beocatb
+
|-
|-
+
| foss || 2017beocatb ||
|XZ/5.2.3-GCCcore-7.2.0
+
{|
|-
+
|-
|foss/2017beocatb
+
|FFTW/3.3.6-gompi-2017beocatb
|-
+
|-
|zlib/1.2.11-GCCcore-7.2.0
+
|GCC/7.2.0-2.29
|}
+
|-
  || Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
+
|OpenBLAS/0.2.20-GCC-7.2.0-2.29
|-
+
|-
| [http://xmlsoft.org/ libxslt] || 1.1.32-foss-2017beocatb ||  
+
|OpenMPI/2.1.1-GCC-7.2.0-2.29
{|
+
|-
|-
+
|ScaLAPACK/2.0.2-gompi-2017beocatb-OpenBLAS-0.2.20
|foss/2017beocatb
+
|}
|-
+
|| GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
|libxml2/2.9.4-GCCcore-7.2.0
+
|-
|-
+
| [http://freeglut.sourceforge.net/ freeglut] || 3.0.0-foss-2017beocatb ||
|zlib/1.2.11-GCCcore-7.2.0
+
{|
|}
+
|-
  || Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
+
|Mesa/17.0.2-foss-2017beocatb
 +
|-
 +
|X11/20170314-GCCcore-7.2.0
 +
|-
 +
|foss/2017beocatb
 +
|-
 +
|libGLU/9.0.0-foss-2017beocatb
 +
|}
 +
|| freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.
 +
|-
 +
| [http://freetype.org freetype] || 2.8-GCCcore-7.2.0 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|bzip2/1.0.6-GCCcore-7.2.0
 +
|-
 +
|libpng/1.6.32-GCCcore-7.2.0
 +
|-
 +
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
|| FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as we
 +
|-
 +
| [http://www.gnu.org/software/gettext/ gettext] || 0.19.8.1-GCCcore-7.2.0 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|libxml2/2.9.4-GCCcore-7.2.0
 +
|-
 +
|ncurses/6.0-GCCcore-7.2.0
 +
|}
 +
|| GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we
 +
|-
 +
| [http://www.gnu.org/software/gettext/ gettext] || 0.19.8.1 || ncurses/6.0 || GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we
 +
|-
 +
| gmvapich2 || 2017beocatb ||
 +
{|
 +
|-
 +
|GCC/7.2.0-2.29
 +
|-
 +
|MVAPICH2/2.3b-GCC-7.2.0-2.29
 +
|}
 +
|| GNU Compiler Collection (GCC) based compiler toolchain, including MVAPICH2 for MPI support.
 +
|-
 +
| [http://gnuplot.sourceforge.net/ gnuplot] || 5.0.6-foss-2017beocatb ||
 +
{|
 +
|-
 +
|Pango/1.40.5-foss-2017beocatb
 +
|-
 +
|Qt5/5.8.0-foss-2017beocatb
 +
|-
 +
|cairo/1.14.8-foss-2017beocatb
 +
|-
 +
|foss/2017beocatb
 +
|-
 +
|libcerf/1.5-GCCcore-7.2.0
 +
|-
 +
|libgd/2.2.4-GCCcore-7.2.0
 +
|-
 +
|libjpeg-turbo/1.5.2-GCCcore-7.2.0
 +
|-
 +
|libpng/1.6.32-GCCcore-7.2.0
 +
|}
 +
|| Portable interactive, function plotting utility
 +
|-
 +
| gompi || 2017a ||
 +
{|
 +
|-
 +
|GCC/6.3.0-2.27
 +
|-
 +
|OpenMPI/2.0.2-GCC-6.3.0-2.27
 +
|}
 +
|| GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
 +
|-
 +
| gompi || 2017b ||
 +
{|
 +
|-
 +
|GCC/6.4.0-2.28
 +
|-
 +
|OpenMPI/2.1.1-GCC-6.4.0-2.28
 +
|}
 +
|| GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
 +
|-
 +
| gompi || 2017beocatb ||
 +
{|
 +
|-
 +
|GCC/7.2.0-2.29
 +
|-
 +
|OpenMPI/2.1.1-GCC-7.2.0-2.29
 +
|}
 +
|| GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
 +
|-
 +
| [http://www.gnu.org/software/gperf/ gperf] || 3.1-GCCcore-7.2.0 || GCCcore/7.2.0 || GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison on
 +
|-
 +
| [https://www.gnu.org/software/help2man/ help2man] || 1.47.4-GCCcore-6.3.0 || GCCcore/6.3.0 || help2man produces simple manual pages from the '--help' and '--version' output of other commands.
 +
|-
 +
| [https://www.gnu.org/software/help2man/ help2man] || 1.47.4-GCCcore-6.4.0 || GCCcore/6.4.0 || help2man produces simple manual pages from the '--help' and '--version' output of other comman
 +
|-
 +
| [https://www.gnu.org/software/help2man/ help2man] || 1.47.4-GCCcore-7.2.0 || GCCcore/7.2.0 || help2man produces simple manual pages from the '--help' and '--version' output of other commands.
 +
|-
 +
| [https://www.gnu.org/software/help2man/ help2man] || 1.47.4 ||  || help2man produces simple manual pages from the '--help' and '--version' output of other commands.
 +
|-
 +
| [http://www.open-mpi.org/projects/hwloc/ hwloc] || 1.11.5-GCC-6.3.0-2.27 ||
 +
{|
 +
|-
 +
|GCC/6.3.0-2.27
 +
|-
 +
|numactl/2.0.11-GCCcore-6.3.0
 +
|}
 +
|| The Portable Hardware Locality (hwloc) software package provides a portable abstract
 +
|-
 +
| [http://www.open-mpi.org/projects/hwloc/ hwloc] || 1.11.5-iccifort-2017.1.132-GCC-6.3.0-2.27 ||
 +
{|
 +
|-
 +
|iccifort/2017.1.132-GCC-6.3.0-2.27
 +
|-
 +
|numactl/2.0.11-GCCcore-6.3.0
 +
|}
 +
|| The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
 +
|-
 +
| [http://www.open-mpi.org/projects/hwloc/ hwloc] || 1.11.7-GCCcore-6.4.0 ||
 +
{|
 +
|-
 +
|GCCcore/6.4.0
 +
|-
 +
|numactl/2.0.11-GCCcore-6.4.0
 +
|}
 +
|| The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficient
 +
|-
 +
| [http://www.open-mpi.org/projects/hwloc/ hwloc] || 1.11.7-GCCcore-7.2.0 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|numactl/2.0.11-GCCcore-7.2.0
 +
|}
 +
|| The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficient
 +
|-
 +
| [http://software.intel.com/en-us/intel-compilers/ icc] || 2017.1.132-GCC-6.3.0-2.27 ||
 +
{|
 +
|-
 +
|GCCcore/6.3.0
 +
|-
 +
|binutils/2.27-GCCcore-6.3.0
 +
|}
 +
|| C and C++ compiler from Intel
 +
|-
 +
| [http://software.intel.com/en-us/intel-compilers/ icc] || 2017.4.196-GCC-6.4.0-2.28 ||
 +
{|
 +
|-
 +
|GCCcore/6.4.0
 +
|-
 +
|binutils/2.28-GCCcore-6.4.0
 +
|}
 +
|| Intel C and C++ compilers
 +
|-
 +
| [http://software.intel.com/en-us/intel-compilers/ icc] || 2018.0.128-GCC-7.2.0-2.29 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|binutils/2.29-GCCcore-7.2.0
 +
|}
 +
|| Intel C and C++ compilers
 +
|-
 +
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iccifort] || 2017.1.132-GCC-6.3.0-2.27 ||
 +
{|
 +
|-
 +
|icc/2017.1.132-GCC-6.3.0-2.27
 +
|-
 +
|ifort/2017.1.132-GCC-6.3.0-2.27
 +
|}
 +
|| Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL
 +
|-
 +
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iccifort] || 2017.4.196-GCC-6.4.0-2.28 ||
 +
{|
 +
|-
 +
|icc/2017.4.196-GCC-6.4.0-2.28
 +
|-
 +
|ifort/2017.4.196-GCC-6.4.0-2.28
 +
|}
 +
|| Intel C, C++ & Fortran compilers
 +
|-
 +
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iccifort] || 2018.0.128-GCC-7.2.0-2.29 ||
 +
{|
 +
|-
 +
|icc/2018.0.128-GCC-7.2.0-2.29
 +
|-
 +
|ifort/2018.0.128-GCC-7.2.0-2.29
 +
|}
 +
|| Intel C, C++ & Fortran compilers
 +
|-
 +
| [http://software.intel.com/en-us/intel-compilers/ ifort] || 2017.1.132-GCC-6.3.0-2.27 ||
 +
{|
 +
|-
 +
|GCCcore/6.3.0
 +
|-
 +
|binutils/2.27-GCCcore-6.3.0
 +
|}
 +
|| Fortran compiler from Intel
 +
|-
 +
| [http://software.intel.com/en-us/intel-compilers/ ifort] || 2017.4.196-GCC-6.4.0-2.28 ||
 +
{|
 +
|-
 +
|GCCcore/6.4.0
 +
|-
 +
|binutils/2.28-GCCcore-6.4.0
 +
|}
 +
|| Intel Fortran compiler
 +
|-
 +
| [http://software.intel.com/en-us/intel-compilers/ ifort] || 2018.0.128-GCC-7.2.0-2.29 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|binutils/2.29-GCCcore-7.2.0
 +
|}
 +
|| Intel Fortran compiler
 +
|-
 +
| [http://software.intel.com/en-us/intel-mkl/ imkl] || 2017.1.132-iompi-2017a || iompi/2017a || Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.
 +
|-
 +
| [http://software.intel.com/en-us/intel-mkl/ imkl] || 2017.3.196-iompi-2017b || iompi/2017b || Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.
 +
|-
 +
| [http://software.intel.com/en-us/intel-mkl/ imkl] || 2018.0.128-iompi-2017beocatb || iompi/2017beocatb || Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.
 +
|-
 +
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iomkl] || 2017a ||
 +
{|
 +
|-
 +
|OpenMPI/2.0.2-iccifort-2017.1.132-GCC-6.3.0-2.27
 +
|-
 +
|icc/2017.1.132-GCC-6.3.0-2.27
 +
|-
 +
|ifort/2017.1.132-GCC-6.3.0-2.27
 +
|-
 +
|imkl/2017.1.132-iompi-2017a
 +
|}
 +
|| Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.
 +
|-
 +
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iomkl] || 2017b ||
 +
{|
 +
|-
 +
|OpenMPI/2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28
 +
|-
 +
|icc/2017.4.196-GCC-6.4.0-2.28
 +
|-
 +
|ifort/2017.4.196-GCC-6.4.0-2.28
 +
|-
 +
|imkl/2017.3.196-iompi-2017b
 +
|}
 +
|| Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.
 +
|-
 +
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iomkl] || 2017beocatb ||
 +
{|
 +
|-
 +
|OpenMPI/2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29
 +
|-
 +
|icc/2018.0.128-GCC-7.2.0-2.29
 +
|-
 +
|ifort/2018.0.128-GCC-7.2.0-2.29
 +
|-
 +
|imkl/2018.0.128-iompi-2017beocatb
 +
|}
 +
|| Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.
 +
|-
 +
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iompi] || 2017a ||
 +
{|
 +
|-
 +
|OpenMPI/2.0.2-iccifort-2017.1.132-GCC-6.3.0-2.27
 +
|-
 +
|icc/2017.1.132-GCC-6.3.0-2.27
 +
|-
 +
|ifort/2017.1.132-GCC-6.3.0-2.27
 +
|}
 +
|| Intel C/C++ and Fortran compilers, alongside Open MPI.
 +
|-
 +
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iompi] || 2017b ||
 +
{|
 +
|-
 +
|OpenMPI/2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28
 +
|-
 +
|icc/2017.4.196-GCC-6.4.0-2.28
 +
|-
 +
|ifort/2017.4.196-GCC-6.4.0-2.28
 +
|}
 +
|| Intel C/C++ and Fortran compilers, alongside Open MPI.
 +
|-
 +
| [http://software.intel.com/en-us/intel-cluster-toolkit-compiler/ iompi] || 2017beocatb ||
 +
{|
 +
|-
 +
|OpenMPI/2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29
 +
|-
 +
|icc/2018.0.128-GCC-7.2.0-2.29
 +
|-
 +
|ifort/2018.0.128-GCC-7.2.0-2.29
 +
|}
 +
|| Intel C/C++ and Fortran compilers, alongside Open MPI.
 +
|-
 +
| [http://software.intel.com/en-us/articles/intel-ipp/ ipp] || 2018.0.128 ||  || Intel Integrated Performance Primitives (Intel IPP) is an extensive library of multicore-ready, highly optimized software functions for multimedia, data processing, and communications applications. Intel IPP offers thousands of optimized functions covering frequently used fundamental algorithms.
 +
|-
 +
| [ftp://ftp.freedesktop.org/pub/mesa/glu/ libGLU] || 9.0.0-foss-2017beocatb ||
 +
{|
 +
|-
 +
|Mesa/17.0.2-foss-2017beocatb
 +
|-
 +
|foss/2017beocatb
 +
|}
 +
|| The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
 +
|-
 +
| [ftp://ftp.freedesktop.org/pub/mesa/glu/ libGLU] || 9.0.0-iomkl-2017beocatb ||
 +
{|
 +
|-
 +
|Mesa/17.0.2-iomkl-2017beocatb
 +
|-
 +
|iomkl/2017beocatb
 +
|}
 +
|| The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
 +
|-
 +
| [http://apps.jcns.fz-juelich.de/doku/sc/libcerf libcerf] || 1.5-GCCcore-7.2.0 || GCCcore/7.2.0 || libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functio
 +
|-
 +
| [http://dri.freedesktop.org libdrm] || 2.4.76-GCCcore-7.2.0 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|X11/20170314-GCCcore-7.2.0
 +
|}
 +
|| Direct Rendering Manager runtime library.
 +
|-
 +
| [http://sourceware.org/libffi/ libffi] || 3.2.1-GCCcore-6.3.0 || GCCcore/6.3.0 || The libffi library provides a portable, high level programming interface to various call
 +
|-
 +
| [http://sourceware.org/libffi/ libffi] || 3.2.1-GCCcore-7.2.0 || GCCcore/7.2.0 || The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-ti
 +
|-
 +
| [https://libgd.github.io/ libgd] || 2.2.4-GCCcore-7.2.0 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|fontconfig/2.12.4-GCCcore-7.2.0
 +
|-
 +
|libjpeg-turbo/1.5.2-GCCcore-7.2.0
 +
|-
 +
|libpng/1.6.32-GCCcore-7.2.0
 +
|-
 +
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
|| GD is an open source code library for the dynamic creation of images by programmers.
 +
|-
 +
| [http://sourceforge.net/projects/libjpeg-turbo/ libjpeg-turbo] || 1.5.2-GCCcore-7.2.0 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|NASM/2.13.01-GCCcore-7.2.0
 +
|}
 +
|| libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcodi
 +
|-
 +
| [http://www.libpng.org/pub/png/libpng.html libpng] || 1.6.32-GCCcore-7.2.0 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
|| libpng is the official PNG reference library
 +
|-
 +
| [http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html libreadline] || 7.0-GCCcore-6.3.0 ||
 +
{|
 +
|-
 +
|GCCcore/6.3.0
 +
|-
 +
|ncurses/6.0-GCCcore-6.3.0
 +
|}
 +
|| The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
 +
|-
 +
| [http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html libreadline] || 7.0-GCCcore-7.2.0 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|ncurses/6.0-GCCcore-7.2.0
 +
|}
 +
|| The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous comman
 +
|-
 +
| [http://www.mega-nerd.com/libsndfile libsndfile] || 1.0.28-foss-2017beocatb || foss/2017beocatb || Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
 +
|-
 +
| [http://www.gnu.org/software/libtool libtool] || 2.4.6-GCCcore-6.3.0 ||
 +
{|
 +
|-
 +
|GCCcore/6.3.0
 +
|-
 +
|M4/1.4.18-GCCcore-6.3.0
 +
|}
 +
|| GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
 +
|-
 +
| [http://www.gnu.org/software/libtool libtool] || 2.4.6-GCCcore-7.2.0 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|M4/1.4.18-GCCcore-7.2.0
 +
|}
 +
|| GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interfa
 +
|-
 +
| [http://xmlsoft.org/ libxml2] || 2.9.4-GCCcore-6.3.0 ||
 +
{|
 +
|-
 +
|GCCcore/6.3.0
 +
|-
 +
|XZ/5.2.3-GCCcore-6.3.0
 +
|-
 +
|zlib/1.2.11-GCCcore-6.3.0
 +
|}
 +
|| Libxml2 is the XML C parser a
 +
|-
 +
| [http://xmlsoft.org/ libxml2] || 2.9.4-GCCcore-7.2.0 ||
 +
{|
 +
|-
 +
|GCCcore/7.2.0
 +
|-
 +
|XZ/5.2.3-GCCcore-7.2.0
 +
|-
 +
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
  || Libxml2 is the XML C parser a
 +
|-
 +
| [http://xmlsoft.org/ libxml2] || 2.9.4-foss-2017beocatb-Python-2.7.13 ||  
 +
{|
 +
|-
 +
|Python/2.7.13-foss-2017beocatb
 +
|-
 +
|XZ/5.2.3-GCCcore-7.2.0
 +
|-
 +
|foss/2017beocatb
 +
|-
 +
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
  || Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
 +
|-
 +
| [http://xmlsoft.org/ libxml2] || 2.9.4-iomkl-2017beocatb-Python-2.7.13 ||
 +
{|
 +
|-
 +
|Python/2.7.13-iomkl-2017beocatb
 +
|-
 +
|XZ/5.2.3-GCCcore-7.2.0
 +
|-
 +
|iomkl/2017beocatb
 +
|-
 +
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
|| Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
 +
|-
 +
| [http://xmlsoft.org/ libxslt] || 1.1.29-iomkl-2017a ||
 +
{|
 +
|-
 +
|iomkl/2017a
 +
|-
 +
|libxml2/2.9.4-GCCcore-6.3.0
 +
|-
 +
|zlib/1.2.11-GCCcore-6.3.0
 +
|}
 +
|| Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
 +
|-
 +
| [http://xmlsoft.org/ libxslt] || 1.1.32-foss-2017beocatb ||  
 +
{|
 +
|-
 +
|foss/2017beocatb
 +
|-
 +
|libxml2/2.9.4-GCCcore-7.2.0
 +
|-
 +
|zlib/1.2.11-GCCcore-7.2.0
 +
|}
 +
  || Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
 +
|-
 +
| [https://www.mathworks.com/products/compiler/matlab-runtime.html mcr] || 2017b || Java/1.8.0_144 || mcr is the MATLAB Compiler Runtime. This allows MATLAB code, compiled elsewhere, to be run.
 +
|-
 +
| [http://www.gnu.org/software/ncurses/ ncurses] || 6.0-GCCcore-6.3.0 || GCCcore/6.3.0 || The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
 
|-
 
|-
 
| [http://www.gnu.org/software/ncurses/ ncurses] || 6.0-GCCcore-7.2.0 || GCCcore/7.2.0 || The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curs
 
| [http://www.gnu.org/software/ncurses/ ncurses] || 6.0-GCCcore-7.2.0 || GCCcore/7.2.0 || The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curs
Line 1,393: Line 1,958:
 
|}
 
|}
 
  || Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel spa
 
  || Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel spa
 +
|-
 +
| [http://oss.sgi.com/projects/libnuma/ numactl] || 2.0.11-GCCcore-6.3.0 || GCCcore/6.3.0 || The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
 
|-
 
|-
 
| [http://oss.sgi.com/projects/libnuma/ numactl] || 2.0.11-GCCcore-6.4.0 || GCCcore/6.4.0 || The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own progr
 
| [http://oss.sgi.com/projects/libnuma/ numactl] || 2.0.11-GCCcore-6.4.0 || GCCcore/6.4.0 || The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own progr
Line 1,429: Line 1,996:
 
|}
 
|}
 
  || The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
 
  || The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
 +
|-
 +
| [http://www.zlib.net/ zlib] || 1.2.11-GCCcore-6.3.0 || GCCcore/6.3.0 || zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
 
|-
 
|-
 
| [http://www.zlib.net/ zlib] || 1.2.11-GCCcore-6.4.0 || GCCcore/6.4.0 || zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating syst
 
| [http://www.zlib.net/ zlib] || 1.2.11-GCCcore-6.4.0 || GCCcore/6.4.0 || zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating syst
Line 1,435: Line 2,004:
 
|-
 
|-
 
| [http://www.zlib.net/ zlib] || 1.2.11 ||  || zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
 
| [http://www.zlib.net/ zlib] || 1.2.11 ||  || zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
 +
|-
 +
| [http://www.zlib.net/ zlib] || 1.2.8 ||  || zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
 
|}
 
|}

Revision as of 18:20, 31 December 2017

Module Version Dependencies Description
Anaconda2 5.0.1 Built to complement the rich, open source Python communi
Anaconda3 5.0.1 Built to complement the rich, open source Python communi
Autoconf 2.69-GCCcore-6.3.0
GCCcore/6.3.0
M4/1.4.18-GCCcore-6.3.0
Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro calls.
Autoconf 2.69-GCCcore-7.2.0
GCCcore/7.2.0
M4/1.4.18-GCCcore-7.2.0
Autoconf is an extensible package of M4 macros that produce shell scripts to automatically configure software source code packages. These scripts can adapt the packages to many kinds of UNIX-like systems without manual user intervention. Autoconf creates a configuration script for a package from a template file that lists the operating system features that the package can use, in the form of M4 macro cal
Automake 1.15-GCCcore-6.3.0
Autoconf/2.69-GCCcore-6.3.0
GCCcore/6.3.0
Automake: GNU Standards-compliant Makefile generator
Automake 1.15.1-GCCcore-7.2.0
Autoconf/2.69-GCCcore-7.2.0
GCCcore/7.2.0
Automake: GNU Standards-compliant Makefile generator
Autotools 20150215-GCCcore-6.3.0
Autoconf/2.69-GCCcore-6.3.0
Automake/1.15-GCCcore-6.3.0
GCCcore/6.3.0
libtool/2.4.6-GCCcore-6.3.0
This bundle collect the standard GNU build tools: Autoconf, Automake and libtool
Autotools 20170619-GCCcore-7.2.0
Autoconf/2.69-GCCcore-7.2.0
Automake/1.15.1-GCCcore-7.2.0
GCCcore/7.2.0
libtool/2.4.6-GCCcore-7.2.0
This bundle collect the standard GNU build tools: Autoconf, Automake and libt
BLAST 2.2.26-Linux_x86_64 Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.
BLAST+ 2.6.0-foss-2017beocatb-Python-2.7.13
Boost/1.63.0-foss-2017beocatb-Python-2.7.13
GMP/6.1.2-GCCcore-7.2.0
PCRE/8.41-GCCcore-7.2.0
Python/2.7.13-foss-2017beocatb
bzip2/1.0.6-GCCcore-7.2.0
foss/2017beocatb
libjpeg-turbo/1.5.2-GCCcore-7.2.0
libpng/1.6.32-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Basic Local Alignment Search Tool, or BLAST, is an algorithm for comparing primary biological sequence information, such as the amino-acid sequences of different proteins or the nucleotides of DNA sequences.
Bio-SamTools 1.43-foss-2017beocatb-Perl-5.26.0
BioPerl/1.7.1-foss-2017beocatb-Perl-5.26.0
Perl/5.26.0-foss-2017beocatb
SAMtools/0.1.17-foss-2017beocatb
foss/2017beocatb
This is a Perl interface to the SAMtools sequence alignment interface.
BioPerl 1.7.1-foss-2017beocatb-Perl-5.26.0
Perl/5.26.0-foss-2017beocatb
foss/2017beocatb
Bioperl is the product of a community effort to produce Perl code which is useful in biology. Examples include Sequence objects, Alignment objects and database searching objects.
Bison 3.0.4-GCCcore-6.3.0 GCCcore/6.3.0 Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
Bison 3.0.4-GCCcore-6.4.0 GCCcore/6.4.0 Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tabl
Bison 3.0.4-GCCcore-7.2.0 GCCcore/7.2.0 Bison is a general-purpose parser generator that converts an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.
Bison 3.0.4 Bison is a general-purpose parser generator that converts an annotated context-free gram
Boost 1.58.0-iomkl-2017a
bzip2/1.0.6-GCCcore-6.3.0
iomkl/2017a
zlib/1.2.11-GCCcore-6.3.0
Boost provides free peer-reviewed portable C++ source libraries.
Boost 1.63.0-foss-2017beocatb-Python-2.7.13
Python/2.7.13-foss-2017beocatb
bzip2/1.0.6-GCCcore-7.2.0
foss/2017beocatb
zlib/1.2.11-GCCcore-7.2.0
Boost provides free peer-reviewed portable C++ source libraries.
Boost 1.63.0-iomkl-2017beocatb-Python-2.7.13
Python/2.7.13-iomkl-2017beocatb
bzip2/1.0.6-GCCcore-7.2.0
iomkl/2017beocatb
zlib/1.2.11-GCCcore-7.2.0
Boost provides free peer-reviewed portable C++ source libraries.
Bowtie 1.2.1.1-foss-2017beocatb
foss/2017beocatb
tbb/2018.0.128
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome.
Bowtie2 2.3.3.1-foss-2017beocatb
foss/2017beocatb
tbb/2018.0.128
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome, its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
CGAL 4.9-foss-2017beocatb
Boost/1.63.0-foss-2017beocatb-Python-2.7.13
GMP/6.1.2-GCCcore-7.2.0
MPFR/3.1.5-GCCcore-7.2.0
Python/2.7.13-foss-2017beocatb
Qt/4.8.7-foss-2017beocatb
foss/2017beocatb
libGLU/9.0.0-foss-2017beocatb
zlib/1.2.11-GCCcore-7.2.0
The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
CGAL 4.9-iomkl-2017beocatb
Boost/1.63.0-iomkl-2017beocatb-Python-2.7.13
GMP/6.1.2-GCCcore-7.2.0
MPFR/3.1.5-GCCcore-7.2.0
Python/2.7.13-iomkl-2017beocatb
Qt/4.8.7-iomkl-2017beocatb
iomkl/2017beocatb
libGLU/9.0.0-iomkl-2017beocatb
zlib/1.2.11-GCCcore-7.2.0
The goal of the CGAL Open Source Project is to provide easy access to efficient and reliable geometric algorithms in the form of a C++ library.
CMake 3.9.1-GCCcore-7.2.0
GCCcore/7.2.0
ncurses/6.0-GCCcore-7.2.0
CMake, the cross-platform, open-source build system. CMake is a family of tools designed to build, test and package softwa
CUDA 9.0.176_384.81 CUDA (formerly Compute Unified Device Architecture) is a parallel computing platform and programming model created by NVIDIA and implemented by the graphics processing units (GPUs) that they produce. CUDA gives developers access to the virtual instruction set and memory of the parallel computational elements in CUDA GPUs.
DB 6.2.32-GCCcore-7.2.0 GCCcore/7.2.0 Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projec
DB 6.2.32-iomkl-2017a iomkl/2017a Berkeley DB enables the development of custom data management solutions, without the overhead traditionally associated with such custom projects.
Doxygen 1.8.13-GCCcore-7.2.0 GCCcore/7.2.0 Doxygen is a documentation system for C++, C, Java, Objective-C, Python, IDL (Corba and Microsoft flavors), Fortran, VHDL, PHP, C#, and to some extent
EasyBuild 3.4.0 EasyBuild is a software build and installation framework written in Python that allows you to install software in a structured, repeatable and robust way.
Eigen 3.3.4-GCCcore-7.2.0 GCCcore/7.2.0 Eigen is a C++ template library for linear algebra: matrices, vectors, numerical solvers, and related algorithms.
FFTW 3.3.6-gompi-2017a gompi/2017a FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
FFTW 3.3.6-gompi-2017b gompi/2017b FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
FFTW 3.3.6-gompi-2017beocatb gompi/2017beocatb FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
FFTW 3.3.6-iomkl-2017b iomkl/2017b FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
FFTW 3.3.6-iomkl-2017beocatb iomkl/2017beocatb FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
FLTK 1.3.4-foss-2017beocatb
Mesa/17.0.2-foss-2017beocatb
foss/2017beocatb
libGLU/9.0.0-foss-2017beocatb
libjpeg-turbo/1.5.2-GCCcore-7.2.0
libpng/1.6.32-GCCcore-7.2.0
xprop/1.2.2-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
FLTK is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its built-in GLUT emulation.
GC3Pie 2.4.2 GC3Pie is a Python package for running large job campaigns on diverse batch-oriented execution environments. - Homepage: https://gc3pie.readthedocs.org
GCC 6.3.0-2.27
GCCcore/6.3.0
binutils/2.27-GCCcore-6.3.0
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
GCC 6.4.0-2.28
GCCcore/6.4.0
binutils/2.28-GCCcore-6.4.0
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). [NOTE: This module does not include Objective-C, Java or A
GCC 7.1.0-2.28
GCCcore/7.1.0
binutils/2.28-GCCcore-7.1.0
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
GCC 7.2.0-2.29
GCCcore/7.2.0
binutils/2.29-GCCcore-7.2.0
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
GCCcore 6.3.0 The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
GCCcore 6.4.0 The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). [NOTE: This module does not include Objective-C, Java or A
GCCcore 7.1.0 The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
GCCcore 7.2.0 The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...).
GDAL 2.2.0-foss-2017beocatb-Python-2.7.13
GEOS/3.6.1-foss-2017beocatb-Python-2.7.13
JasPer/2.0.12-foss-2017beocatb
LibTIFF/4.0.8-GCCcore-7.2.0
PCRE/8.41-GCCcore-7.2.0
Python/2.7.13-foss-2017beocatb
SQLite/3.20.1-GCCcore-7.2.0
cURL/7.55.1-GCCcore-7.2.0
expat/2.2.4-GCCcore-7.2.0
foss/2017beocatb
libjpeg-turbo/1.5.2-GCCcore-7.2.0
libpng/1.6.32-GCCcore-7.2.0
libxml2/2.9.4-GCCcore-7.2.0
netCDF/4.4.1.1-foss-2017beocatb
zlib/1.2.11-GCCcore-7.2.0
GDAL is a translator library for raster geospatial data formats that is released under an X/MIT style Open Source license by the Open Source Geospatial Foundation. As a library, it presents a single abstract data model to the calling application for all supported formats. It also comes with a variety of useful commandline utilities for data translation and processing.
GEOS 3.6.1-foss-2017beocatb-Python-2.7.13
Python/2.7.13-foss-2017beocatb
foss/2017beocatb
GEOS (Geometry Engine - Open Source) is a C++ port of the Java Topology Suite (JTS)
GL2PS 1.4.0-foss-2017beocatb
Mesa/17.0.2-foss-2017beocatb
X11/20170314-GCCcore-7.2.0
foss/2017beocatb
freeglut/3.0.0-foss-2017beocatb
libGLU/9.0.0-foss-2017beocatb
libpng/1.6.32-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
GL2PS: an OpenGL to PostScript printing library
GLPK 4.61-foss-2017beocatb
GMP/6.1.2-GCCcore-7.2.0
foss/2017beocatb
The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in the form of a callable library.
GLib 2.53.5-GCCcore-7.2.0
GCCcore/7.2.0
PCRE/8.41-GCCcore-7.2.0
gettext/0.19.8.1-GCCcore-7.2.0
libffi/3.2.1-GCCcore-7.2.0
libxml2/2.9.4-GCCcore-7.2.0
util-linux/2.30.1-GCCcore-7.2.0
GLib is one of the base libraries of the GTK+ project
GMP 6.1.2-GCCcore-6.3.0 GCCcore/6.3.0 GMP is a free library for arbitrary precision arithmet
GMP 6.1.2-GCCcore-7.2.0 GCCcore/7.2.0 GMP is a free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbe
GObject-Introspection 1.53.5-foss-2017beocatb
GLib/2.53.5-GCCcore-7.2.0
Python/2.7.13-foss-2017beocatb
foss/2017beocatb
libffi/3.2.1-GCCcore-7.2.0
GObject introspection is a middleware layer between C libraries (using GObject) and language bindings. The C library can be scanned at compile time and generate a metadata file, in addition to the actual native C library. Then at runtime, language bindings can read this metadata and automatically provide bindings to call into the C library.
GROMACS 2016.4-foss-2017beocatb-hybrid
Boost/1.63.0-foss-2017beocatb-Python-2.7.13
foss/2017beocatb
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
Ghostscript 9.21-foss-2017beocatb
GLib/2.53.5-GCCcore-7.2.0
LibTIFF/4.0.8-GCCcore-7.2.0
cairo/1.14.8-foss-2017beocatb
expat/2.2.4-GCCcore-7.2.0
foss/2017beocatb
freetype/2.8-GCCcore-7.2.0
libjpeg-turbo/1.5.2-GCCcore-7.2.0
libpng/1.6.32-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Ghostscript is a versatile processor for PostScript data with the ability to render PostScript to different targets. It used to be part of the cups printing stack, but is no longer used for that.
GraphicsMagick 1.3.25-foss-2017beocatb
Ghostscript/9.21-foss-2017beocatb
LibTIFF/4.0.8-GCCcore-7.2.0
X11/20170314-GCCcore-7.2.0
XZ/5.2.3-GCCcore-7.2.0
bzip2/1.0.6-GCCcore-7.2.0
foss/2017beocatb
freetype/2.8-GCCcore-7.2.0
libjpeg-turbo/1.5.2-GCCcore-7.2.0
libpng/1.6.32-GCCcore-7.2.0
libxml2/2.9.4-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
GraphicsMagick is the swiss army knife of image processing.
HDF5 1.8.19-foss-2017beocatb
Szip/2.1.1-GCCcore-7.2.0
foss/2017beocatb
zlib/1.2.11-GCCcore-7.2.0
HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.
HDF5 1.8.19-iomkl-2017beocatb
Szip/2.1.1-GCCcore-7.2.0
iomkl/2017beocatb
zlib/1.2.11-GCCcore-7.2.0
HDF5 is a unique technology suite that makes possible the management of extremely large and complex data collections.
HTSlib 1.4.1-iomkl-2017a
XZ/5.2.3-GCCcore-6.3.0
bzip2/1.0.6-GCCcore-6.3.0
cURL/7.53.1-GCCcore-6.3.0
iomkl/2017a
zlib/1.2.11-GCCcore-6.3.0
A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
HTSlib 1.6-foss-2017beocatb
XZ/5.2.3-GCCcore-7.2.0
bzip2/1.0.6-GCCcore-7.2.0
cURL/7.55.1-GCCcore-7.2.0
foss/2017beocatb
zlib/1.2.11-GCCcore-7.2.0
A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix
HarfBuzz 1.3.1-foss-2017beocatb
GLib/2.53.5-GCCcore-7.2.0
cairo/1.14.8-foss-2017beocatb
foss/2017beocatb
freetype/2.8-GCCcore-7.2.0
HarfBuzz is an OpenType text shaping engine.
JasPer 2.0.12-foss-2017beocatb foss/2017beocatb The JasPer Project is an open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard.
Java 1.8.0_131 Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and servers.
Java 1.8.0_144 Java Platform, Standard Edition (Java SE) lets you develop and deploy Java applications on desktops and serve
LLVM 4.0.1-foss-2017beocatb
foss/2017beocatb
ncurses/6.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
LLVM 4.0.1-iomkl-2017beocatb
iomkl/2017beocatb
ncurses/6.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
The LLVM Core libraries provide a modern source- and target-independent optimizer, along with code generation support for many popular CPUs (as well as some less common ones!) These libraries are built around a well specified code representation known as the LLVM intermediate representation ("LLVM IR"). The LLVM Core libraries are well documented, and it is particularly easy to invent your own language (or port an existing compiler) to use LLVM as an optimizer and code generator.
LibTIFF 4.0.8-GCCcore-7.2.0 GCCcore/7.2.0 tiff: Library and tools for reading and writing TIFF data files
M4 1.4.17 GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e
M4 1.4.18-GCCcore-6.3.0 GCCcore/6.3.0 GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
M4 1.4.18-GCCcore-6.4.0 GCCcore/6.4.0 GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e
M4 1.4.18-GCCcore-7.2.0 GCCcore/7.2.0 GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, etc.
M4 1.4.18 GNU M4 is an implementation of the traditional Unix macro processor. It is mostly SVR4 compatible although it has some extensions (for example, handling more than 9 positional parameters to macros). GNU M4 also has built-in functions for including files, running shell commands, doing arithmetic, e
METIS 5.1.0-foss-2017beocatb foss/2017beocatb METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
METIS 5.1.0-iomkl-2017beocatb iomkl/2017beocatb METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes.
MPFR 3.1.5-GCCcore-7.2.0
GCCcore/7.2.0
GMP/6.1.2-GCCcore-7.2.0
The MPFR library is a C library for multiple-precision floating-point computations with correct roundi
MVAPICH2 2.3b-GCC-7.2.0-2.29 GCC/7.2.0-2.29 This is an MPI 3.0 implementation. It is based on MPICH2 and MVICH.
Mako 1.0.6-foss-2017beocatb-Python-2.7.13
Python/2.7.13-foss-2017beocatb
foss/2017beocatb
A super-fast templating language that borrows the best ideas from the existing templating languages
Mako 1.0.6-iomkl-2017beocatb-Python-2.7.13
Python/2.7.13-iomkl-2017beocatb
iomkl/2017beocatb
A super-fast templating language that borrows the best ideas from the existing templating languages
Mesa 17.0.2-foss-2017beocatb
LLVM/4.0.1-foss-2017beocatb
X11/20170314-GCCcore-7.2.0
foss/2017beocatb
libdrm/2.4.76-GCCcore-7.2.0
nettle/3.3-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
Mesa 17.0.2-iomkl-2017beocatb
LLVM/4.0.1-iomkl-2017beocatb
X11/20170314-GCCcore-7.2.0
iomkl/2017beocatb
libdrm/2.4.76-GCCcore-7.2.0
nettle/3.3-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.
NAMD 2.12-Git-2017-12-18-iomkl-2017b-mpi
FFTW/3.3.6-iomkl-2017b
Tcl/8.6.7-GCCcore-6.4.0
iomkl/2017b
NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems.
NASM 2.13.01-GCCcore-7.2.0 GCCcore/7.2.0 NASM: General-purpose x86 assembler
NCBI-Toolkit 18.0.0-iomkl-2017a
Boost/1.58.0-iomkl-2017a
DB/6.2.32-iomkl-2017a
HTSlib/1.4.1-iomkl-2017a
Python/2.7.13-iomkl-2017a
SAMtools/1.4.1-iomkl-2017a
iomkl/2017a
libxslt/1.1.29-iomkl-2017a
The NCBI Toolkit is a collection of utilities developed for the production and distribution of GenBank, Entrez, BLAST, and related services by the National Center for Biotechnology Information.
NLopt 2.4.2-foss-2017beocatb foss/2017beocatb NLopt is a free/open-source library for nonlinear optimization, providing a common interface for a number of different free optimization routines available online as well as original implementations of various other algorithms.
Octave 4.2.1-foss-2017beocatb
FFTW/3.3.6-gompi-2017beocatb
FLTK/1.3.4-foss-2017beocatb
GL2PS/1.4.0-foss-2017beocatb
GLPK/4.61-foss-2017beocatb
GraphicsMagick/1.3.25-foss-2017beocatb
HDF5/1.8.19-foss-2017beocatb
Java/1.8.0_144
Mesa/17.0.2-foss-2017beocatb
PCRE/8.41-GCCcore-7.2.0
Qhull/2015.2-foss-2017beocatb
Qt5/5.8.0-foss-2017beocatb
SuiteSparse/4.5.5-foss-2017beocatb-METIS-5.1.0
X11/20170314-GCCcore-7.2.0
arpack-ng/3.5.0-foss-2017beocatb
cURL/7.55.1-GCCcore-7.2.0
fontconfig/2.12.4-GCCcore-7.2.0
foss/2017beocatb
freetype/2.8-GCCcore-7.2.0
gnuplot/5.0.6-foss-2017beocatb
libGLU/9.0.0-foss-2017beocatb
libreadline/7.0-GCCcore-7.2.0
ncurses/6.0-GCCcore-7.2.0
qrupdate/1.1.2-foss-2017beocatb
zlib/1.2.11-GCCcore-7.2.0
GNU Octave is a high-level interpreted language, primarily intended for numerical computations.
OpenBLAS 0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0 GCC/6.3.0-2.27 OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
OpenBLAS 0.2.20-GCC-6.4.0-2.28 GCC/6.4.0-2.28 OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
OpenBLAS 0.2.20-GCC-7.2.0-2.29 GCC/7.2.0-2.29 OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
OpenMPI 2.0.2-GCC-6.3.0-2.27
GCC/6.3.0-2.27
hwloc/1.11.5-GCC-6.3.0-2.27
The Open MPI Project is an open source MPI-2 implementation.
OpenMPI 2.0.2-iccifort-2017.1.132-GCC-6.3.0-2.27
hwloc/1.11.5-iccifort-2017.1.132-GCC-6.3.0-2.27
iccifort/2017.1.132-GCC-6.3.0-2.27
The Open MPI Project is an open source MPI-2 implementation.
OpenMPI 2.1.1-GCC-6.4.0-2.28
GCC/6.4.0-2.28
hwloc/1.11.7-GCCcore-6.4.0
The Open MPI Project is an open source MPI-2 implementation.
OpenMPI 2.1.1-GCC-7.2.0-2.29
GCC/7.2.0-2.29
hwloc/1.11.7-GCCcore-7.2.0
The Open MPI Project is an open source MPI-2 implementation.
OpenMPI 2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28
hwloc/1.11.7-GCCcore-6.4.0
iccifort/2017.4.196-GCC-6.4.0-2.28
The Open MPI Project is an open source MPI-2 implementation.
OpenMPI 2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29
hwloc/1.11.7-GCCcore-7.2.0
iccifort/2018.0.128-GCC-7.2.0-2.29
The Open MPI Project is an open source MPI-2 implementation.
PCRE 8.41-GCCcore-7.2.0
GCCcore/7.2.0
bzip2/1.0.6-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
The PCRE library is a set of functions that implement regular expression pattern matching using the same syntax and semantics as Perl
PROJ 4.9.3-foss-2017beocatb foss/2017beocatb Program proj is a standard Unix filter function which conver
Pango 1.40.5-foss-2017beocatb
GLib/2.53.5-GCCcore-7.2.0
HarfBuzz/1.3.1-foss-2017beocatb
X11/20170314-GCCcore-7.2.0
cairo/1.14.8-foss-2017beocatb
foss/2017beocatb
Pango is a library for laying out and rendering of text, with an emphasis on internationalizati
ParaView 5.3.0-foss-2017beocatb-mpi
HDF5/1.8.19-foss-2017beocatb
Mesa/17.0.2-foss-2017beocatb
Python/2.7.13-foss-2017beocatb
Qt5/5.8.0-foss-2017beocatb
X11/20170314-GCCcore-7.2.0
foss/2017beocatb
libGLU/9.0.0-foss-2017beocatb
zlib/1.2.11-GCCcore-7.2.0
ParaView is a scientific parallel visualizer.
ParaView 5.3.0-iomkl-2017beocatb-mpi
HDF5/1.8.19-iomkl-2017beocatb
Mesa/17.0.2-iomkl-2017beocatb
Python/2.7.13-iomkl-2017beocatb
Qt5/5.8.0-iomkl-2017beocatb
X11/20170314-GCCcore-7.2.0
iomkl/2017beocatb
libGLU/9.0.0-iomkl-2017beocatb
zlib/1.2.11-GCCcore-7.2.0
ParaView is a scientific parallel visualizer.
Perl 5.26.0-foss-2017beocatb foss/2017beocatb Larry Wall's Practical Extraction and Report Language
Perl 5.26.0-iompi-2017beocatb iompi/2017beocatb Larry Wall's Practical Extraction and Report Language
Python 2.7.13-GCCcore-7.2.0-bare
GCCcore/7.2.0
SQLite/3.20.1-GCCcore-7.2.0
bzip2/1.0.6-GCCcore-7.2.0
libreadline/7.0-GCCcore-7.2.0
ncurses/6.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Python is a programming language that lets you work more quickly and integrate your systems more effective
Python 2.7.13-foss-2017beocatb
GMP/6.1.2-GCCcore-7.2.0
SQLite/3.20.1-GCCcore-7.2.0
bzip2/1.0.6-GCCcore-7.2.0
foss/2017beocatb
libffi/3.2.1-GCCcore-7.2.0
libreadline/7.0-GCCcore-7.2.0
ncurses/6.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Python is a programming language that lets you work more quickly and integrate your systems more effectively.
Python 2.7.13-iomkl-2017a
GMP/6.1.2-GCCcore-6.3.0
SQLite/3.17.0-GCCcore-6.3.0
bzip2/1.0.6-GCCcore-6.3.0
iomkl/2017a
libffi/3.2.1-GCCcore-6.3.0
libreadline/7.0-GCCcore-6.3.0
ncurses/6.0-GCCcore-6.3.0
zlib/1.2.11-GCCcore-6.3.0
Python is a programming language that lets you work more quickly and integrate your systems more effectively.
Python 2.7.13-iomkl-2017beocatb
GMP/6.1.2-GCCcore-7.2.0
SQLite/3.20.1-GCCcore-7.2.0
bzip2/1.0.6-GCCcore-7.2.0
iomkl/2017beocatb
libffi/3.2.1-GCCcore-7.2.0
libreadline/7.0-GCCcore-7.2.0
ncurses/6.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Python is a programming language that lets you work more quickly and integrate your systems more effectively.
Python 3.6.3-foss-2017beocatb
GMP/6.1.2-GCCcore-7.2.0
SQLite/3.20.1-GCCcore-7.2.0
XZ/5.2.3-GCCcore-7.2.0
bzip2/1.0.6-GCCcore-7.2.0
foss/2017beocatb
libffi/3.2.1-GCCcore-7.2.0
libreadline/7.0-GCCcore-7.2.0
ncurses/6.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Python is a programming language that lets you work more quickly and integrate your systems more effectively.
Python 3.6.3-iomkl-2017beocatb
GMP/6.1.2-GCCcore-7.2.0
SQLite/3.20.1-GCCcore-7.2.0
XZ/5.2.3-GCCcore-7.2.0
bzip2/1.0.6-GCCcore-7.2.0
iomkl/2017beocatb
libffi/3.2.1-GCCcore-7.2.0
libreadline/7.0-GCCcore-7.2.0
ncurses/6.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Python is a programming language that lets you work more quickly and integrate your systems more effectively.
Qhull 2015.2-foss-2017beocatb foss/2017beocatb
Qt 4.8.7-foss-2017beocatb
GLib/2.53.5-GCCcore-7.2.0
X11/20170314-GCCcore-7.2.0
foss/2017beocatb
libGLU/9.0.0-foss-2017beocatb
libpng/1.6.32-GCCcore-7.2.0
Qt is a comprehensive cross-platform C++ application framework.
Qt 4.8.7-iomkl-2017beocatb
GLib/2.53.5-GCCcore-7.2.0
X11/20170314-GCCcore-7.2.0
iomkl/2017beocatb
libGLU/9.0.0-iomkl-2017beocatb
libpng/1.6.32-GCCcore-7.2.0
Qt is a comprehensive cross-platform C++ application framework.
Qt5 5.8.0-foss-2017beocatb
GLib/2.53.5-GCCcore-7.2.0
X11/20170314-GCCcore-7.2.0
foss/2017beocatb
libGLU/9.0.0-foss-2017beocatb
libpng/1.6.32-GCCcore-7.2.0
Qt is a comprehensive cross-platform C++ application framework.
Qt5 5.8.0-iomkl-2017beocatb
GLib/2.53.5-GCCcore-7.2.0
X11/20170314-GCCcore-7.2.0
iomkl/2017beocatb
libGLU/9.0.0-iomkl-2017beocatb
libpng/1.6.32-GCCcore-7.2.0
Qt is a comprehensive cross-platform C++ application framework.
R 3.4.0-foss-2017beocatb-X11-20170314
FFTW/3.3.6-gompi-2017beocatb
GDAL/2.2.0-foss-2017beocatb-Python-2.7.13
GMP/6.1.2-GCCcore-7.2.0
Java/1.8.0_144
LibTIFF/4.0.8-GCCcore-7.2.0
Mesa/17.0.2-foss-2017beocatb
NLopt/2.4.2-foss-2017beocatb
PCRE/8.41-GCCcore-7.2.0
PROJ/4.9.3-foss-2017beocatb
SQLite/3.20.1-GCCcore-7.2.0
Tcl/8.6.7-GCCcore-7.2.0
Tk/8.6.7-foss-2017beocatb
X11/20170314-GCCcore-7.2.0
XZ/5.2.3-GCCcore-7.2.0
bzip2/1.0.6-GCCcore-7.2.0
cURL/7.55.1-GCCcore-7.2.0
cairo/1.14.8-foss-2017beocatb
foss/2017beocatb
libGLU/9.0.0-foss-2017beocatb
libjpeg-turbo/1.5.2-GCCcore-7.2.0
libpng/1.6.32-GCCcore-7.2.0
libreadline/7.0-GCCcore-7.2.0
libsndfile/1.0.28-foss-2017beocatb
libxml2/2.9.4-GCCcore-7.2.0
ncurses/6.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
R is a free software environment for statistical computing and graphics.
SAMtools 0.1.17-foss-2017beocatb
foss/2017beocatb
ncurses/6.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
SAMtools 1.4.1-iomkl-2017a
XZ/5.2.3-GCCcore-6.3.0
bzip2/1.0.6-GCCcore-6.3.0
iomkl/2017a
ncurses/6.0-GCCcore-6.3.0
zlib/1.2.11-GCCcore-6.3.0
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
SAMtools 1.6-foss-2017beocatb
XZ/5.2.3-GCCcore-7.2.0
bzip2/1.0.6-GCCcore-7.2.0
foss/2017beocatb
ncurses/6.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
SCOTCH 6.0.4-foss-2017beocatb
foss/2017beocatb
zlib/1.2.11-GCCcore-7.2.0
Software package and libraries for sequential and parallel graph partitioni
SCOTCH 6.0.4-iomkl-2017beocatb
iomkl/2017beocatb
zlib/1.2.11-GCCcore-7.2.0
Software package and libraries for sequential and parallel graph partitioni
SQLite 3.17.0-GCCcore-6.3.0
GCCcore/6.3.0
Tcl/8.6.6-GCCcore-6.3.0
libreadline/7.0-GCCcore-6.3.0
SQLite: SQL Database Engine in a C Library
SQLite 3.20.1-GCCcore-7.2.0
GCCcore/7.2.0
Tcl/8.6.7-GCCcore-7.2.0
libreadline/7.0-GCCcore-7.2.0
SQLite: SQL Database Engine in a C Library
SWIG 3.0.12-foss-2017beocatb-Python-2.7.13
PCRE/8.41-GCCcore-7.2.0
Python/2.7.13-foss-2017beocatb
foss/2017beocatb
SWIG is a software development tool that connects programs written in C and C++ with a variety of high-level programming languages.
ScaLAPACK 2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.7.0
OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0
gompi/2017a
The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
ScaLAPACK 2.0.2-gompi-2017b-OpenBLAS-0.2.20
OpenBLAS/0.2.20-GCC-6.4.0-2.28
gompi/2017b
The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
ScaLAPACK 2.0.2-gompi-2017beocatb-OpenBLAS-0.2.20
OpenBLAS/0.2.20-GCC-7.2.0-2.29
gompi/2017beocatb
The ScaLAPACK (or Scalable LAPACK) library includes a subset of LAPACK routines redesigned for distributed memory MIMD parallel computers.
SuiteSparse 4.5.5-foss-2017beocatb-METIS-5.1.0
METIS/5.1.0-foss-2017beocatb
foss/2017beocatb
SuiteSparse is a collection of libraries manipulate sparse matrices.
Szip 2.1.1-GCCcore-7.2.0 GCCcore/7.2.0 Szip compression software, providing lossless compression of scientific d
Tcl 8.6.6-GCCcore-6.3.0
GCCcore/6.3.0
zlib/1.2.11-GCCcore-6.3.0
Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming langua
Tcl 8.6.7-GCCcore-6.4.0
GCCcore/6.4.0
zlib/1.2.11-GCCcore-6.4.0
Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many mo
Tcl 8.6.7-GCCcore-7.2.0
GCCcore/7.2.0
zlib/1.2.11-GCCcore-7.2.0
Tcl (Tool Command Language) is a very powerful but easy to learn dynamic programming language, suitable for a very wide range of uses, including web and desktop applications, networking, administration, testing and many mo
Tk 8.6.7-foss-2017beocatb
Tcl/8.6.7-GCCcore-7.2.0
X11/20170314-GCCcore-7.2.0
foss/2017beocatb
zlib/1.2.11-GCCcore-7.2.0
Tk is an open source, cross-platform widget toolchain that provides a library of basic elements for building a graphical user interface (GUI) in many different programming languages.
VASP 5.4.4-iomkl-2017a iomkl/2017a The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic sc
X11 20170314-GCCcore-7.2.0
GCCcore/7.2.0
bzip2/1.0.6-GCCcore-7.2.0
fontconfig/2.12.4-GCCcore-7.2.0
freetype/2.8-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
The X Window System (X11) is a windowing system for bitmap displays
XZ 5.2.3-GCCcore-6.3.0 GCCcore/6.3.0 xz: XZ utilities
XZ 5.2.3-GCCcore-7.2.0 GCCcore/7.2.0 xz: XZ utilities
arpack-ng 3.5.0-foss-2017beocatb foss/2017beocatb ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.
binutils 2.27-GCCcore-6.3.0 GCCcore/6.3.0 binutils: GNU binary utilities
binutils 2.27 binutils: GNU binary utilities
binutils 2.28-GCCcore-6.4.0 GCCcore/6.4.0 binutils: GNU binary utilities
binutils 2.28 binutils: GNU binary utilities
binutils 2.29-GCCcore-7.2.0 GCCcore/7.2.0 binutils: GNU binary utilities
binutils 2.29 binutils: GNU binary utilities
bzip2 1.0.6-GCCcore-6.3.0 GCCcore/6.3.0 bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
bzip2 1.0.6-GCCcore-7.2.0 GCCcore/7.2.0 bzip2 is a freely available, patent free, high-quality data compressor. It typically compresses files to within 10% to 15% of the best available techniques (the PPM family of statistical compressors), whilst being around twice as fast at compression and six times faster at decompression.
cURL 7.53.1-GCCcore-6.3.0 GCCcore/6.3.0 libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and more.
cURL 7.55.1-GCCcore-7.2.0
GCCcore/7.2.0
zlib/1.2.11-GCCcore-7.2.0
libcurl is a free and easy-to-use client-side URL transfer library, supporting DICT, FILE, FTP, FTPS, Gopher, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, POP3, POP3S, RTMP, RTSP, SCP, SFTP, SMTP, SMTPS, Telnet and TFTP. libcurl supports SSL certificates, HTTP POST, HTTP PUT, FTP uploading, HTTP form based upload, proxies, cookies, user+password authentication (Basic, Digest, NTLM, Negotiate, Kerberos), file transfer resume, http proxy tunneling and mo
cairo 1.14.8-foss-2017beocatb
GLib/2.53.5-GCCcore-7.2.0
X11/20170314-GCCcore-7.2.0
bzip2/1.0.6-GCCcore-7.2.0
expat/2.2.4-GCCcore-7.2.0
foss/2017beocatb
freetype/2.8-GCCcore-7.2.0
libpng/1.6.32-GCCcore-7.2.0
pixman/0.34.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Cairo is a 2D graphics library with support for multiple output devices. Currently supported output targets include the X Window System (via both Xlib and XCB), Quartz, Win32, image buffers, PostScript, PDF, and SVG file output. Experimental backends include OpenGL, BeOS, OS/2, and DirectFB
expat 2.2.4-GCCcore-7.2.0 GCCcore/7.2.0 Expat is an XML parser library written in C. It is a stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start ta
flex 2.6.0 M4/1.4.17 Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
flex 2.6.3-GCCcore-6.3.0
GCCcore/6.3.0
M4/1.4.18-GCCcore-6.3.0
Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
flex 2.6.3 M4/1.4.18 Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in text.
flex 2.6.4-GCCcore-6.4.0
GCCcore/6.4.0
M4/1.4.18-GCCcore-6.4.0
Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in te
flex 2.6.4-GCCcore-7.2.0
GCCcore/7.2.0
M4/1.4.18-GCCcore-7.2.0
Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in te
flex 2.6.4 M4/1.4.18 Flex (Fast Lexical Analyzer) is a tool for generating scanners. A scanner, sometimes called a tokenizer, is a program which recognizes lexical patterns in te
fontconfig 2.12.4-GCCcore-7.2.0
GCCcore/7.2.0
expat/2.2.4-GCCcore-7.2.0
freetype/2.8-GCCcore-7.2.0
Fontconfig is a library designed to provide system-wide font configuration, customization and application acce
foss 2017a
FFTW/3.3.6-gompi-2017a
GCC/6.3.0-2.27
OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0
OpenMPI/2.0.2-GCC-6.3.0-2.27
ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.7.0
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
foss 2017b
FFTW/3.3.6-gompi-2017b
GCC/6.4.0-2.28
OpenBLAS/0.2.20-GCC-6.4.0-2.28
OpenMPI/2.1.1-GCC-6.4.0-2.28
ScaLAPACK/2.0.2-gompi-2017b-OpenBLAS-0.2.20
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
foss 2017beocatb
FFTW/3.3.6-gompi-2017beocatb
GCC/7.2.0-2.29
OpenBLAS/0.2.20-GCC-7.2.0-2.29
OpenMPI/2.1.1-GCC-7.2.0-2.29
ScaLAPACK/2.0.2-gompi-2017beocatb-OpenBLAS-0.2.20
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.
freeglut 3.0.0-foss-2017beocatb
Mesa/17.0.2-foss-2017beocatb
X11/20170314-GCCcore-7.2.0
foss/2017beocatb
libGLU/9.0.0-foss-2017beocatb
freeglut is a completely OpenSourced alternative to the OpenGL Utility Toolkit (GLUT) library.
freetype 2.8-GCCcore-7.2.0
GCCcore/7.2.0
bzip2/1.0.6-GCCcore-7.2.0
libpng/1.6.32-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
FreeType 2 is a software font engine that is designed to be small, efficient, highly customizable, and portable while capable of producing high-quality output (glyph images). It can be used in graphics libraries, display servers, font conversion tools, text image generation tools, and many other products as we
gettext 0.19.8.1-GCCcore-7.2.0
GCCcore/7.2.0
libxml2/2.9.4-GCCcore-7.2.0
ncurses/6.0-GCCcore-7.2.0
GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we
gettext 0.19.8.1 ncurses/6.0 GNU 'gettext' is an important step for the GNU Translation Project, as it is an asset on which we
gmvapich2 2017beocatb
GCC/7.2.0-2.29
MVAPICH2/2.3b-GCC-7.2.0-2.29
GNU Compiler Collection (GCC) based compiler toolchain, including MVAPICH2 for MPI support.
gnuplot 5.0.6-foss-2017beocatb
Pango/1.40.5-foss-2017beocatb
Qt5/5.8.0-foss-2017beocatb
cairo/1.14.8-foss-2017beocatb
foss/2017beocatb
libcerf/1.5-GCCcore-7.2.0
libgd/2.2.4-GCCcore-7.2.0
libjpeg-turbo/1.5.2-GCCcore-7.2.0
libpng/1.6.32-GCCcore-7.2.0
Portable interactive, function plotting utility
gompi 2017a
GCC/6.3.0-2.27
OpenMPI/2.0.2-GCC-6.3.0-2.27
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
gompi 2017b
GCC/6.4.0-2.28
OpenMPI/2.1.1-GCC-6.4.0-2.28
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
gompi 2017beocatb
GCC/7.2.0-2.29
OpenMPI/2.1.1-GCC-7.2.0-2.29
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support.
gperf 3.1-GCCcore-7.2.0 GCCcore/7.2.0 GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in form of C or C++ code, for looking up a value depending on the input string. The hash function is perfect, which means that the hash table has no collisions, and the hash table lookup needs a single string comparison on
help2man 1.47.4-GCCcore-6.3.0 GCCcore/6.3.0 help2man produces simple manual pages from the '--help' and '--version' output of other commands.
help2man 1.47.4-GCCcore-6.4.0 GCCcore/6.4.0 help2man produces simple manual pages from the '--help' and '--version' output of other comman
help2man 1.47.4-GCCcore-7.2.0 GCCcore/7.2.0 help2man produces simple manual pages from the '--help' and '--version' output of other commands.
help2man 1.47.4 help2man produces simple manual pages from the '--help' and '--version' output of other commands.
hwloc 1.11.5-GCC-6.3.0-2.27
GCC/6.3.0-2.27
numactl/2.0.11-GCCcore-6.3.0
The Portable Hardware Locality (hwloc) software package provides a portable abstract
hwloc 1.11.5-iccifort-2017.1.132-GCC-6.3.0-2.27
iccifort/2017.1.132-GCC-6.3.0-2.27
numactl/2.0.11-GCCcore-6.3.0
The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficiently.
hwloc 1.11.7-GCCcore-6.4.0
GCCcore/6.4.0
numactl/2.0.11-GCCcore-6.4.0
The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficient
hwloc 1.11.7-GCCcore-7.2.0
GCCcore/7.2.0
numactl/2.0.11-GCCcore-7.2.0
The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, architectures, ...) of the hierarchical topology of modern architectures, including NUMA memory nodes, sockets, shared caches, cores and simultaneous multithreading. It also gathers various system attributes such as cache and memory information as well as the locality of I/O devices such as network interfaces, InfiniBand HCAs or GPUs. It primarily aims at helping applications with gathering information about modern computing hardware so as to exploit it accordingly and efficient
icc 2017.1.132-GCC-6.3.0-2.27
GCCcore/6.3.0
binutils/2.27-GCCcore-6.3.0
C and C++ compiler from Intel
icc 2017.4.196-GCC-6.4.0-2.28
GCCcore/6.4.0
binutils/2.28-GCCcore-6.4.0
Intel C and C++ compilers
icc 2018.0.128-GCC-7.2.0-2.29
GCCcore/7.2.0
binutils/2.29-GCCcore-7.2.0
Intel C and C++ compilers
iccifort 2017.1.132-GCC-6.3.0-2.27
icc/2017.1.132-GCC-6.3.0-2.27
ifort/2017.1.132-GCC-6.3.0-2.27
Intel Cluster Toolkit Compiler Edition provides Intel C,C++ and fortran compilers, Intel MPI and Intel MKL
iccifort 2017.4.196-GCC-6.4.0-2.28
icc/2017.4.196-GCC-6.4.0-2.28
ifort/2017.4.196-GCC-6.4.0-2.28
Intel C, C++ & Fortran compilers
iccifort 2018.0.128-GCC-7.2.0-2.29
icc/2018.0.128-GCC-7.2.0-2.29
ifort/2018.0.128-GCC-7.2.0-2.29
Intel C, C++ & Fortran compilers
ifort 2017.1.132-GCC-6.3.0-2.27
GCCcore/6.3.0
binutils/2.27-GCCcore-6.3.0
Fortran compiler from Intel
ifort 2017.4.196-GCC-6.4.0-2.28
GCCcore/6.4.0
binutils/2.28-GCCcore-6.4.0
Intel Fortran compiler
ifort 2018.0.128-GCC-7.2.0-2.29
GCCcore/7.2.0
binutils/2.29-GCCcore-7.2.0
Intel Fortran compiler
imkl 2017.1.132-iompi-2017a iompi/2017a Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.
imkl 2017.3.196-iompi-2017b iompi/2017b Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.
imkl 2018.0.128-iompi-2017beocatb iompi/2017beocatb Intel Math Kernel Library is a library of highly optimized, extensively threaded math routines for science, engineering, and financial applications that require maximum performance. Core math functions include BLAS, LAPACK, ScaLAPACK, Sparse Solvers, Fast Fourier Transforms, Vector Math, and more.
iomkl 2017a
OpenMPI/2.0.2-iccifort-2017.1.132-GCC-6.3.0-2.27
icc/2017.1.132-GCC-6.3.0-2.27
ifort/2017.1.132-GCC-6.3.0-2.27
imkl/2017.1.132-iompi-2017a
Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.
iomkl 2017b
OpenMPI/2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28
icc/2017.4.196-GCC-6.4.0-2.28
ifort/2017.4.196-GCC-6.4.0-2.28
imkl/2017.3.196-iompi-2017b
Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.
iomkl 2017beocatb
OpenMPI/2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29
icc/2018.0.128-GCC-7.2.0-2.29
ifort/2018.0.128-GCC-7.2.0-2.29
imkl/2018.0.128-iompi-2017beocatb
Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.
iompi 2017a
OpenMPI/2.0.2-iccifort-2017.1.132-GCC-6.3.0-2.27
icc/2017.1.132-GCC-6.3.0-2.27
ifort/2017.1.132-GCC-6.3.0-2.27
Intel C/C++ and Fortran compilers, alongside Open MPI.
iompi 2017b
OpenMPI/2.1.1-iccifort-2017.4.196-GCC-6.4.0-2.28
icc/2017.4.196-GCC-6.4.0-2.28
ifort/2017.4.196-GCC-6.4.0-2.28
Intel C/C++ and Fortran compilers, alongside Open MPI.
iompi 2017beocatb
OpenMPI/2.1.1-iccifort-2018.0.128-GCC-7.2.0-2.29
icc/2018.0.128-GCC-7.2.0-2.29
ifort/2018.0.128-GCC-7.2.0-2.29
Intel C/C++ and Fortran compilers, alongside Open MPI.
ipp 2018.0.128 Intel Integrated Performance Primitives (Intel IPP) is an extensive library of multicore-ready, highly optimized software functions for multimedia, data processing, and communications applications. Intel IPP offers thousands of optimized functions covering frequently used fundamental algorithms.
libGLU 9.0.0-foss-2017beocatb
Mesa/17.0.2-foss-2017beocatb
foss/2017beocatb
The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
libGLU 9.0.0-iomkl-2017beocatb
Mesa/17.0.2-iomkl-2017beocatb
iomkl/2017beocatb
The OpenGL Utility Library (GLU) is a computer graphics library for OpenGL.
libcerf 1.5-GCCcore-7.2.0 GCCcore/7.2.0 libcerf is a self-contained numeric library that provides an efficient and accurate implementation of complex error functions, along with Dawson, Faddeeva, and Voigt functio
libdrm 2.4.76-GCCcore-7.2.0
GCCcore/7.2.0
X11/20170314-GCCcore-7.2.0
Direct Rendering Manager runtime library.
libffi 3.2.1-GCCcore-6.3.0 GCCcore/6.3.0 The libffi library provides a portable, high level programming interface to various call
libffi 3.2.1-GCCcore-7.2.0 GCCcore/7.2.0 The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run-ti
libgd 2.2.4-GCCcore-7.2.0
GCCcore/7.2.0
fontconfig/2.12.4-GCCcore-7.2.0
libjpeg-turbo/1.5.2-GCCcore-7.2.0
libpng/1.6.32-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
GD is an open source code library for the dynamic creation of images by programmers.
libjpeg-turbo 1.5.2-GCCcore-7.2.0
GCCcore/7.2.0
NASM/2.13.01-GCCcore-7.2.0
libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and decompression. libjpeg is a library that implements JPEG image encoding, decoding and transcodi
libpng 1.6.32-GCCcore-7.2.0
GCCcore/7.2.0
zlib/1.2.11-GCCcore-7.2.0
libpng is the official PNG reference library
libreadline 7.0-GCCcore-6.3.0
GCCcore/6.3.0
ncurses/6.0-GCCcore-6.3.0
The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous commands.
libreadline 7.0-GCCcore-7.2.0
GCCcore/7.2.0
ncurses/6.0-GCCcore-7.2.0
The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they are typed in. Both Emacs and vi editing modes are available. The Readline library includes additional functions to maintain a list of previously-entered command lines, to recall and perhaps reedit those lines, and perform csh-like history expansion on previous comman
libsndfile 1.0.28-foss-2017beocatb foss/2017beocatb Libsndfile is a C library for reading and writing files containing sampled sound (such as MS Windows WAV and the Apple/SGI AIFF format) through one standard library interface.
libtool 2.4.6-GCCcore-6.3.0
GCCcore/6.3.0
M4/1.4.18-GCCcore-6.3.0
GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interface.
libtool 2.4.6-GCCcore-7.2.0
GCCcore/7.2.0
M4/1.4.18-GCCcore-7.2.0
GNU libtool is a generic library support script. Libtool hides the complexity of using shared libraries behind a consistent, portable interfa
libxml2 2.9.4-GCCcore-6.3.0
GCCcore/6.3.0
XZ/5.2.3-GCCcore-6.3.0
zlib/1.2.11-GCCcore-6.3.0
Libxml2 is the XML C parser a
libxml2 2.9.4-GCCcore-7.2.0
GCCcore/7.2.0
XZ/5.2.3-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Libxml2 is the XML C parser a
libxml2 2.9.4-foss-2017beocatb-Python-2.7.13
Python/2.7.13-foss-2017beocatb
XZ/5.2.3-GCCcore-7.2.0
foss/2017beocatb
zlib/1.2.11-GCCcore-7.2.0
Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
libxml2 2.9.4-iomkl-2017beocatb-Python-2.7.13
Python/2.7.13-iomkl-2017beocatb
XZ/5.2.3-GCCcore-7.2.0
iomkl/2017beocatb
zlib/1.2.11-GCCcore-7.2.0
Libxml2 is the XML C parser and toolchain developed for the Gnome project (but usable outside of the Gnome platform).
libxslt 1.1.29-iomkl-2017a
iomkl/2017a
libxml2/2.9.4-GCCcore-6.3.0
zlib/1.2.11-GCCcore-6.3.0
Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
libxslt 1.1.32-foss-2017beocatb
foss/2017beocatb
libxml2/2.9.4-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Libxslt is the XSLT C library developed for the GNOME project (but usable outside of the Gnome platform).
mcr 2017b Java/1.8.0_144 mcr is the MATLAB Compiler Runtime. This allows MATLAB code, compiled elsewhere, to be run.
ncurses 6.0-GCCcore-6.3.0 GCCcore/6.3.0 The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
ncurses 6.0-GCCcore-7.2.0 GCCcore/7.2.0 The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curs
ncurses 6.0 The Ncurses (new curses) library is a free software emulation of curses in System V Release 4.0, and more. It uses Terminfo format, supports pads and color and multiple highlights and forms characters and function-key mapping, and has all the other SYSV-curses enhancements over BSD Curses.
netCDF 4.4.1.1-foss-2017beocatb
HDF5/1.8.19-foss-2017beocatb
Szip/2.1.1-GCCcore-7.2.0
cURL/7.55.1-GCCcore-7.2.0
foss/2017beocatb
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
nettle 3.3-GCCcore-7.2.0
GCCcore/7.2.0
GMP/6.1.2-GCCcore-7.2.0
Nettle is a cryptographic library that is designed to fit easily in more or less any context: In crypto toolkits for object-oriented languages (C++, Python, Pike, ...), in applications like LSH or GNUPG, or even in kernel spa
numactl 2.0.11-GCCcore-6.3.0 GCCcore/6.3.0 The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own program.
numactl 2.0.11-GCCcore-6.4.0 GCCcore/6.4.0 The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own progr
numactl 2.0.11-GCCcore-7.2.0 GCCcore/7.2.0 The numactl program allows you to run your application program on specific cpu's and memory nodes. It does this by supplying a NUMA memory policy to the operating system before running your program. The libnuma library provides convenient ways for you to add NUMA memory policies into your own progr
pixman 0.34.0-GCCcore-7.2.0 GCCcore/7.2.0 Pixman is a low-level software library for pixel manipulation, providing features such as image compositing and trapezoid rasterization. Important users of pixman are the cairo graphics library and the X serv
pkg-config 0.29.2-GCCcore-7.2.0 GCCcore/7.2.0 pkg-config is a helper tool used when compiling applications and libraries. It helps you insert the correct compiler options on the command line so an application can use gcc -o test test.c `pkg-config --libs --cflags glib-2.0` for instance, rather than hard-coding values on where to find glib (or other librarie
qrupdate 1.1.2-foss-2017beocatb foss/2017beocatb qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions.
sparsehash 2.0.3-GCCcore-7.2.0 GCCcore/7.2.0 An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or spe
sparsehash 2.0.3-iccifort-2018.0.128-GCC-7.2.0-2.29 iccifort/2018.0.128-GCC-7.2.0-2.29 An extremely memory-efficient hash_map implementation. 2 bits/entry overhead! The SparseHash library contains several hash-map implementations, including implementations that optimize for space or speed.
tbb 2018.0.128 Intel Threading Building Blocks (Intel TBB) is a widely used, award-winning C++ template library for creating reliable, portable, and scalable parallel applications. Use Intel TBB for a simple and rapid way of developing robust task-based parallel applications that scale to available processor cores, are compatible with multiple environments, and are easier to maintain. Intel TBB is the most proficient way to implement future-proof parallel applications that tap into the power and performance of multicore and manycore hardware platfor
util-linux 2.30.1-GCCcore-7.2.0
GCCcore/7.2.0
ncurses/6.0-GCCcore-7.2.0
zlib/1.2.11-GCCcore-7.2.0
Set of Linux utilities
xprop 1.2.2-GCCcore-7.2.0
GCCcore/7.2.0
X11/20170314-GCCcore-7.2.0
The xprop utility is for displaying window and font properties in an X server. One window or font is selected using the command line arguments or possibly in the case of a window, by clicking on the desired window. A list of properties is then given, possibly with formatting information.
zlib 1.2.11-GCCcore-6.3.0 GCCcore/6.3.0 zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
zlib 1.2.11-GCCcore-6.4.0 GCCcore/6.4.0 zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating syst
zlib 1.2.11-GCCcore-7.2.0 GCCcore/7.2.0 zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
zlib 1.2.11 zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.
zlib 1.2.8 zlib is designed to be a free, general-purpose, legally unencumbered -- that is, not covered by any patents -- lossless data-compression library for use on virtually any computer hardware and operating system.